Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 7.5e-211 736.9 358 100.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 3.6e-136 488.8 361 70.4
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.0e-103 380.9 364 56.3
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.7e-101 373.6 361 54.6
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.2e-101 373.2 356 55.6
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 3.7e-101 372.5 265 68.7
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.4e-100 370.5 361 53.5
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.4e-100 369.8 372 54.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.0e-99 366.7 361 54.3
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.0e-99 366.7 361 54.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 2.7e-99 366.3 264 67.8
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.5e-99 365.9 361 54.0
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 5.9e-99 365.2 260 68.1
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.7e-99 364.8 260 66.9
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.0e-98 364.4 256 68.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.3e-98 364.0 356 54.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.7e-98 363.6 362 55.0
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 5.0e-98 362.1 266 66.9
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 5.0e-98 362.1 270 64.4
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 6.5e-98 361.7 361 53.5
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 8.6e-98 361.3 361 54.6
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.6e-98 361.3 361 54.6
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-97 360.9 360 54.4
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.1e-97 360.9 361 54.0
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.1e-97 360.9 257 68.1
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.1e-97 360.9 251 68.9
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.9e-97 360.1 257 68.1
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.9e-97 360.1 395 51.6
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.9e-97 360.1 257 68.5
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.3e-97 359.4 363 54.3
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.3e-97 359.4 261 65.9
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 4.2e-97 359.0 270 64.8
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.5e-97 358.6 270 67.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 9.5e-97 357.8 362 55.2
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.2e-96 357.5 266 65.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.6e-96 357.1 355 55.5
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.8e-96 356.3 257 66.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 6.1e-96 355.1 362 52.8
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.0e-95 354.4 257 67.7
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.0e-95 354.4 257 67.7
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 2.3e-95 353.2 265 66.0
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.3e-95 353.2 269 64.3
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.0e-95 352.8 361 53.5
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.0e-95 352.8 257 67.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 5.2e-95 352.1 365 54.0
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 8.9e-95 351.3 258 67.1
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.5e-94 350.5 370 54.1
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.6e-94 349.7 364 51.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.4e-94 349.4 265 64.5
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.7e-94 348.6 257 66.1
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 9.8e-94 347.8 256 64.8
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 9.8e-94 347.8 387 52.2
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.2e-93 346.7 266 63.9
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 8.3e-93 344.7 252 66.3
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 4.1e-92 342.4 376 52.1
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 5.4e-92 342.0 361 51.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 9.2e-92 341.3 274 62.8
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.2e-91 340.9 313 54.6
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 1.2e-91 340.9 355 51.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.2e-91 340.9 355 52.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.6e-91 340.5 362 51.4
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.0e-91 340.1 355 51.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.0e-91 340.1 359 52.9
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.5e-91 339.3 387 49.9
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 3.5e-91 339.3 384 49.5
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 5.9e-91 338.6 380 51.3
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 5.9e-91 338.6 359 51.0
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.7e-90 337.0 257 62.6
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.7e-90 337.0 256 63.3
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.9e-90 336.3 252 63.9
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.1e-89 334.3 371 50.1
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 2.5e-89 333.2 263 62.7
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 7.3e-89 331.6 361 51.0
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 9.5e-89 331.3 263 62.0
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 9.5e-89 331.3 270 58.9
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.2e-88 330.9 256 62.9
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.8e-88 329.7 352 51.7
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.0e-87 326.2 232 67.7
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.0e-87 325.9 278 57.9
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 6.8e-87 325.1 252 61.5
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.0e-86 323.6 232 66.4
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 7.5e-86 321.6 228 66.7
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.2e-85 320.1 263 61.2
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 6.4e-85 318.5 275 58.2
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 6.4e-85 318.5 412 43.9
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 5.0e-82 308.9 260 58.5
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.3e-81 306.2 290 54.1
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.3e-79 300.1 366 47.0
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.0e-78 297.0 209 66.5
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 3.4e-78 296.2 218 64.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-77 293.9 211 64.9
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.9e-77 292.4 263 55.9
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.4e-76 290.0 263 55.1
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 9.2e-76 288.1 262 55.3
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 4.6e-75 285.8 314 46.8
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 6.0e-75 285.4 263 53.6
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 7.8e-75 285.0 339 45.4
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 3.0e-74 283.1 270 52.2
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 6.6e-74 282.0 261 51.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.6e-73 278.9 382 43.7
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 6.2e-72 275.4 270 51.5
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 8.1e-72 275.0 260 51.2
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.7e-69 267.3 256 51.2
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 3.7e-69 266.2 260 50.4
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.9e-65 253.8 290 50.0
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 9.5e-65 251.5 270 45.9
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.8e-64 250.0 310 42.6
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.8e-64 250.0 310 42.6
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 4.7e-64 249.2 270 46.7
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 6.2e-64 248.8 268 45.9
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 6.2e-64 248.8 270 46.7
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.8e-63 247.3 310 42.3
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.8e-63 247.3 174 67.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 1.5e-62 244.2 269 45.7
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.0e-62 243.8 270 45.9
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 4.4e-62 242.7 179 67.0
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.1e-59 233.8 201 56.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.5e-59 233.0 155 68.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 6.0e-59 232.3 255 45.5
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 8.7e-58 228.4 162 67.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.4e-52 211.1 228 46.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 3.5e-51 206.5 310 38.7
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.4e-47 193.7 150 64.0
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 4.9e-45 186.0 157 59.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.2e-35 154.8 158 50.6
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.1e-35 154.1 128 57.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-33 147.5 118 61.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 6.2e-32 142.5 202 38.1
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.1e-28 131.7 80 72.5
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 3.3e-25 120.2 104 63.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.5e-22 111.3 92 56.5
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.1e-18 96.3 56 67.9
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 7.2e-12 75.9 63 54.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.2e-11 75.1 46 71.7
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.9e-10 70.1 51 60.8
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-09 68.2 46 65.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.5e-09 68.2 53 54.7
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-08 64.7 55 65.5
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.6e-06 57.4 38 71.1
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 7.7e-06 55.8 323 20.1


User provided reference genes

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