Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000707 Daucus carota HOM05D007358 ORTHO05D009117 1.5e-130 470.3 411 100.0
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 1.1e-24 118.6 162 38.9
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 1.1e-24 118.6 162 38.9
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 5.5e-24 116.3 93 53.8
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 1.6e-23 114.8 92 55.4
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 7.9e-23 112.5 156 36.5
Dinv33449 Davidia involucrata HOM05D007358 ORTHO05D009117 7.9e-23 112.5 93 55.9
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 1.0e-22 112.1 147 36.7
Lj2C1075G10 Lonicera japonica HOM05D007358 ORTHO05D009117 1.4e-22 111.7 94 54.3
FAN04G0278 Fragaria x ananassa HOM05D007358 ORTHO05D009117 1.8e-22 111.3 93 51.6
FAN04G1709 Fragaria x ananassa HOM05D007358 ORTHO05D009117 1.8e-22 111.3 93 51.6
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 2.3e-22 110.9 93 51.6
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 3.0e-22 110.5 94 51.1
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 5.1e-22 109.8 93 51.6
Oeu037939.3 Olea europaea HOM05D007358 ORTHO05D009117 5.1e-22 109.8 93 50.5
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 1.1e-21 108.6 93 50.5
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.1e-21 108.6 93 55.9
Hma1.2p1_0013F.1_g008840 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 1.1e-21 108.6 93 55.9
GSVIVG01008360001 Vitis vinifera HOM05D007358 ORTHO05D009117 1.1e-21 108.6 93 57.0
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 1.5e-21 108.2 170 36.5
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 2.0e-21 107.8 170 36.5
MSTRG.8212 Avicennia marina HOM05D007358 ORTHO05D009117 2.6e-21 107.5 93 50.5
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 1.3e-20 105.1 156 35.9
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.2e-20 104.4 159 32.7
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 2.2e-20 104.4 94 53.2
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 2.8e-20 104.0 167 33.5
CSS0028376 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 3.7e-20 103.6 258 27.9
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 6.3e-20 102.8 147 35.4
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 6.3e-20 102.8 93 46.2
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 1.1e-19 102.1 167 33.5
vmacro05457 Vaccinium macrocarpon HOM05D007358 ORTHO05D009117 2.4e-19 100.9 93 51.6
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 1.2e-18 98.6 93 46.2
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 2.0e-18 97.8 168 29.2
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.9e-18 96.3 168 29.8
CSS0010405 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.0e-17 95.5 88 53.4
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.3e-17 95.1 167 29.3
Ca_04155_v3 Cicer arietinum L. HOM05D007358 ORTHO05D009117 2.2e-17 94.4 93 45.2
QL06p022929 Quercus lobata HOM05D007358 ORTHO05D009117 2.2e-17 94.4 74 55.4
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.9e-17 94.0 94 41.5
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 2.9e-17 94.0 75 50.7
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 3.8e-17 93.6 167 30.5
Manes.17G021400 Manihot esculenta HOM05D007358 ORTHO05D009117 6.5e-17 92.8 85 45.9
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 8.5e-17 92.4 95 44.2
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.1e-16 92.0 170 30.6
Prupe.3G290200 Prunus persica HOM05D007358 ORTHO05D009117 1.5e-16 91.7 83 49.4
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 1.5e-16 91.7 160 28.8
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 1.9e-16 91.3 154 34.4
Aa31LG9G1210 Aethionema arabicum HOM05D007358 ORTHO05D009117 2.5e-16 90.9 93 46.2
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.5e-16 90.9 94 40.4
Phvul.004G009641 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.5e-16 90.9 94 41.5
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.5e-16 89.7 94 40.4
Rhsim11G0131500 Rhododendron simsii HOM05D007358 ORTHO05D009117 5.5e-16 89.7 75 58.7
Haze_14729 Corylus avellana HOM05D007358 ORTHO05D009117 7.2e-16 89.4 83 51.8
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 7.2e-16 89.4 93 46.2
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 7.2e-16 89.4 93 45.2
Cpa.g.sc108.57 Carica papaya HOM05D007358 ORTHO05D009117 9.4e-16 89.0 74 48.6
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 9.4e-16 89.0 93 44.1
CSS0000420 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 1.2e-15 88.6 82 52.4
Cfa007380 Carpinus fangiana HOM05D007358 ORTHO05D009117 2.1e-15 87.8 82 51.2
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 2.7e-15 87.4 93 45.2
CSS0022172 Camellia sinensis var. sinensis HOM05D007358 ORTHO05D009117 3.6e-15 87.0 101 47.5
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 8.0e-15 85.9 83 51.8
CAN.G108.28 Capsicum annuum HOM05D007358 ORTHO05D009117 3.0e-14 84.0 84 46.4
Actinidia36108 Actinidia chinensis HOM05D007358 ORTHO05D009117 5.2e-14 83.2 61 60.7
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 5.2e-14 83.2 162 35.2
QL02p074974 Quercus lobata HOM05D007358 ORTHO05D009117 5.2e-14 83.2 82 50.0
HanXRQChr17g0537401 Helianthus annuus HOM05D007358 ORTHO05D009117 8.8e-14 82.4 81 45.7
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 1.5e-13 81.6 269 33.5
QL02p075081 Quercus lobata HOM05D007358 ORTHO05D009117 1.5e-13 81.6 63 55.6
Ah.01g004590 Amaranthus hybridus HOM05D007358 ORTHO05D009117 2.0e-13 81.3 78 47.4
AUR62023937 Chenopodium quinoa HOM05D007358 ORTHO05D009117 2.0e-13 81.3 61 50.8
Sopen03g003350 Solanum pennellii HOM05D007358 ORTHO05D009117 2.6e-13 80.9 83 48.2
Thecc.04G015800 Theobroma cacao HOM05D007358 ORTHO05D009117 3.3e-13 80.5 80 46.2
Actinidia06003 Actinidia chinensis HOM05D007358 ORTHO05D009117 4.4e-13 80.1 73 53.4
CiPaw.03G042400 Carya illinoinensis HOM05D007358 ORTHO05D009117 4.4e-13 80.1 83 45.8
Lsat_1_v5_gn_3_20581 Lactuca sativa HOM05D007358 ORTHO05D009117 4.4e-13 80.1 79 44.3
Solyc03g007390.4 Solanum lycopersicum HOM05D007358 ORTHO05D009117 4.4e-13 80.1 84 46.4
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 4.4e-13 80.1 82 47.6
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 7.5e-13 79.3 83 47.0
MBI17_g07976_MAGBIO Magnolia biondii HOM05D007358 ORTHO05D009117 2.2e-12 77.8 71 46.5
Gohir.D11G070700 Gossypium hirsutum HOM05D007358 ORTHO05D009117 2.8e-12 77.4 80 45.0
Gorai.007G075800 Gossypium raimondii HOM05D007358 ORTHO05D009117 2.8e-12 77.4 80 45.0
ECA246G0598 Erigeron canadensis HOM05D007358 ORTHO05D009117 3.7e-12 77.0 244 24.2
Nitab4.5_0000080g0200 Nicotiana tabacum HOM05D007358 ORTHO05D009117 6.3e-12 76.3 83 43.4
Gohir.A11G066500 Gossypium hirsutum HOM05D007358 ORTHO05D009117 8.2e-12 75.9 79 45.6
PGSC0003DMG400009102 Solanum tuberosum HOM05D007358 ORTHO05D009117 8.2e-12 75.9 85 44.7
Nitab4.5_0004652g0010 Nicotiana tabacum HOM05D007358 ORTHO05D009117 1.1e-11 75.5 82 42.7
Nn2g12649 Nelumbo nucifera HOM05D007358 ORTHO05D009117 1.4e-11 75.1 62 53.2
Hund17802 Selenicereus undatus HOM05D007358 ORTHO05D009117 1.4e-11 75.1 78 47.4
Sc03g0011070 Simmondsia chinensis HOM05D007358 ORTHO05D009117 1.8e-11 74.7 78 48.7
Carub.0007s3520 Capsella rubella HOM05D007358 ORTHO05D009117 5.3e-11 73.2 79 46.8
AT5G40400 Arabidopsis thaliana HOM05D007358 ORTHO05D009117 1.2e-10 72.0 79 49.4
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 5.9e-10 69.7 79 46.8
Sp7g01520 Schrenkiella parvula HOM05D007358 ORTHO05D009117 1.3e-09 68.6 80 47.5
EL10Ac9g21083 Beta vulgaris HOM05D007358 ORTHO05D009117 1.7e-09 68.2 74 41.9
AL7G49460 Arabidopsis lyrata HOM05D007358 ORTHO05D009117 3.8e-09 67.0 79 44.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 5.0e-09 66.6 154 26.6
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 5.0e-09 66.6 169 24.3
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 1.5e-08 65.1 83 34.9
Lj5C421G19 Lonicera japonica HOM05D007570 ORTHO05D009365 4.2e-08 63.5 126 27.8
Dinv40321 Davidia involucrata HOM05D007570 ORTHO05D009365 5.5e-08 63.2 177 29.9
Peaxi162Scf00566g00064 Petunia axillaris HOM05D007358 ORTHO05D009117 5.5e-08 63.2 56 48.2
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.2e-07 62.0 149 28.9
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 1.2e-07 62.0 166 28.3
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.2e-07 62.0 149 28.9
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 2.1e-07 61.2 143 25.2
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 2.7e-07 60.8 154 25.3
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 2.7e-07 60.8 128 28.1
BcaB08g35953 Brassica carinata HOM05D007390 ORTHO05D009114 3.6e-07 60.5 140 27.9
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 4.7e-07 60.1 152 26.3
Migut.O00416 Erythranthe guttata HOM05D007570 ORTHO05D009365 4.7e-07 60.1 172 26.2
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 4.7e-07 60.1 146 24.0
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 6.1e-07 59.7 139 25.2
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 6.1e-07 59.7 152 25.7
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 6.1e-07 59.7 152 25.7
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 6.1e-07 59.7 158 27.2
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 6.1e-07 59.7 140 27.1
AL3G49590 Arabidopsis lyrata HOM05D005287 ORTHO05D006893 8.0e-07 59.3 158 24.1
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 8.0e-07 59.3 152 25.7
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 8.0e-07 59.3 134 28.4
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 8.0e-07 59.3 138 26.8
CAN.G371.124 Capsicum annuum HOM05D007639 ORTHO05D009509 1.0e-06 58.9 82 39.0
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 1.0e-06 58.9 161 25.5
Duzib213G0999 Durio zibethinus HOM05D007390 ORTHO05D009114 1.0e-06 58.9 145 25.5
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 1.0e-06 58.9 146 27.4
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.0e-06 58.9 130 27.7
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 1.4e-06 58.5 132 25.8
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 1.8e-06 58.2 161 24.2
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 1.8e-06 58.2 145 24.8
HPP92_024515 Vanilla planifolia HOM05D000740 ORTHO05D003236 1.8e-06 58.2 63 38.1
HPP92_024586 Vanilla planifolia HOM05D007358 ORTHO05D009117 1.8e-06 58.2 63 38.1
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 2.3e-06 57.8 140 22.9
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 2.3e-06 57.8 174 24.7
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 2.3e-06 57.8 81 33.3
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 3.0e-06 57.4 158 25.9
ClCG09G021740 Citrullus lanatus HOM05D016535 ORTHO05D000090 3.0e-06 57.4 177 24.3
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 3.0e-06 57.4 144 28.5
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 4.0e-06 57.0 172 23.8
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 4.0e-06 57.0 145 26.9
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 4.0e-06 57.0 158 26.6
Aqoxy5G04021 Aquilegia oxysepala HOM05D000162 ORTHO05D000090 4.0e-06 57.0 151 27.8
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 4.0e-06 57.0 104 33.7
BcaB08g35944 Brassica carinata HOM05D007390 ORTHO05D009114 4.0e-06 57.0 136 24.3
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 4.0e-06 57.0 136 24.3
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 4.0e-06 57.0 136 24.3
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 4.0e-06 57.0 136 24.3
CDE06G1344 Ceratophyllum demersum HOM05D000175 ORTHO05D010751 4.0e-06 57.0 149 24.2
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 4.0e-06 57.0 161 24.2
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 4.0e-06 57.0 161 24.2
VMungo0251G1134 Vigna mungo HOM05D000001 ORTHO05D000003 4.0e-06 57.0 201 23.9
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 5.2e-06 56.6 150 27.3
Ah.03g139350 Amaranthus hybridus HOM05D000891 ORTHO05D000761 5.2e-06 56.6 134 27.6
BcaC05g25040 Brassica carinata HOM05D002890 ORTHO05D009847 5.2e-06 56.6 174 24.7
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 5.2e-06 56.6 132 24.2
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 5.2e-06 56.6 131 26.7
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 5.2e-06 56.6 141 24.8
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 5.2e-06 56.6 127 24.4
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 5.2e-06 56.6 149 27.5
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 6.8e-06 56.2 132 24.2
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 6.8e-06 56.2 157 23.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 6.8e-06 56.2 47 40.4
Lsat_1_v5_gn_4_37641 Lactuca sativa HOM05D007639 ORTHO05D009509 6.8e-06 56.2 161 35.4
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 6.8e-06 56.2 65 43.1
Rhsim10G0018200 Rhododendron simsii HOM05D007358 ORTHO05D009117 6.8e-06 56.2 50 52.0
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 6.8e-06 56.2 149 27.5
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.8e-06 56.2 126 30.2
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 8.8e-06 55.8 135 26.7
Migut.M00355 Erythranthe guttata HOM05D005973 ORTHO05D007285 8.8e-06 55.8 114 28.9
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 8.8e-06 55.8 145 25.5
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 8.8e-06 55.8 158 23.4
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 8.8e-06 55.8 61 42.6
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 8.8e-06 55.8 147 23.8
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 8.8e-06 55.8 191 24.1


User provided reference genes

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