Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.3e-209 733.0 419 100.0
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 7.1e-112 408.3 419 58.5
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 3.9e-110 402.5 402 58.5
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 2.2e-108 396.7 428 56.5
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 4.8e-108 395.6 422 55.5
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.4e-107 393.3 417 53.5
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 5.3e-107 392.1 427 53.4
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.6e-106 389.8 418 57.2
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 2.6e-106 389.8 428 54.7
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 1.3e-105 387.5 434 56.2
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.7e-105 387.1 422 53.3
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 2.9e-105 386.3 428 52.8
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 3.8e-105 386.0 423 52.7
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 3.8e-105 386.0 422 53.6
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.0e-105 385.6 434 53.7
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 1.4e-104 384.0 424 53.8
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.5e-104 383.3 423 52.5
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 4.2e-104 382.5 412 54.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 4.2e-104 382.5 433 59.4
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 5.5e-104 382.1 422 54.0
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.1e-103 380.2 399 54.9
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.1e-103 380.2 423 53.2
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 3.6e-103 379.4 423 53.7
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 4.6e-103 379.0 414 55.1
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.9e-102 375.9 417 51.8
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 5.1e-102 375.6 468 55.3
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 5.1e-102 375.6 394 61.9
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 6.7e-102 375.2 422 51.9
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.1e-101 374.4 421 54.4
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.5e-101 374.0 422 52.4
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 1.5e-101 374.0 423 52.0
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.9e-101 373.6 417 51.3
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 2.5e-101 373.2 420 53.1
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 3.3e-101 372.9 391 57.5
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 5.7e-101 372.1 425 53.2
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 5.7e-101 372.1 417 51.3
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 9.7e-101 371.3 406 54.7
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 9.7e-101 371.3 425 52.9
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 9.7e-101 371.3 420 53.1
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 9.7e-101 371.3 416 55.3
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.7e-100 370.5 417 54.4
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 2.4e-99 366.7 405 54.1
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 3.1e-99 366.3 414 52.4
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 3.1e-99 366.3 432 51.4
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 3.1e-99 366.3 436 51.6
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 4.1e-99 365.9 421 51.8
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.2e-98 364.4 488 48.6
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 2.6e-98 363.2 423 57.4
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 3.4e-98 362.8 411 52.6
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 3.4e-98 362.8 416 52.4
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 4.5e-98 362.5 425 52.9
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.0e-97 361.3 415 51.6
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.0e-97 361.3 414 53.1
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.7e-97 360.5 406 52.7
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 3.8e-97 359.4 413 51.3
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 3.8e-97 359.4 413 51.3
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 3.8e-97 359.4 420 49.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 6.5e-97 358.6 419 51.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.1e-96 357.8 407 53.8
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 1.4e-96 357.5 408 51.0
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 3.2e-96 356.3 406 53.7
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 5.5e-96 355.5 424 52.4
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 7.2e-96 355.1 414 52.4
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 9.4e-96 354.8 413 55.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 9.4e-96 354.8 424 53.1
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 3.6e-95 352.8 416 51.7
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 6.1e-95 352.1 422 51.7
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 1.0e-94 351.3 418 51.4
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 3.0e-94 349.7 432 51.2
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 3.9e-94 349.4 413 58.4
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.0e-93 347.1 428 49.5
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 4.4e-93 345.9 407 52.8
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 5.7e-93 345.5 417 50.8
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 7.4e-93 345.1 401 50.1
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 9.7e-93 344.7 465 48.4
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.3e-92 344.4 406 52.5
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-92 344.4 413 51.3
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.3e-92 344.4 436 50.5
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.3e-92 344.4 480 45.6
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.7e-92 344.0 419 50.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 4.8e-92 342.4 406 52.0
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.4e-91 340.9 417 51.6
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.8e-91 340.5 425 48.9
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 4.1e-91 339.3 419 52.7
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 9.1e-91 338.2 414 53.9
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.5e-90 337.4 419 46.5
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.6e-90 336.7 422 51.7
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 8.5e-89 331.6 395 49.9
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 3.2e-88 329.7 400 52.0
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 7.2e-88 328.6 397 50.6
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.0e-86 324.7 363 55.4
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.0e-86 324.7 417 46.8
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.4e-86 324.3 461 52.9
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 5.2e-86 322.4 402 49.0
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 3.7e-84 316.2 419 52.3
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 8.2e-84 315.1 411 45.7
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 8.2e-84 315.1 421 46.8
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.8e-83 313.9 423 44.2
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.6e-82 310.1 439 48.1
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 6.5e-81 305.4 624 39.3
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 8.8e-78 295.0 361 53.7
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 8.5e-73 278.5 417 43.4
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 2.7e-71 273.5 413 40.9
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.0e-65 255.0 410 43.2
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.5e-64 251.1 162 72.8
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 5.6e-56 222.6 142 75.4
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.6e-53 213.8 129 77.5
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 3.9e-49 199.9 190 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 4.3e-48 196.4 403 33.5
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 7.3e-48 195.7 421 37.5
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 4.4e-45 186.4 190 47.4
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 7.5e-45 185.7 212 49.1
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.6e-42 177.9 330 40.3
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.5e-42 176.8 110 77.3
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.1e-30 138.7 243 32.9
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.3e-28 131.7 182 41.8
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 3.3e-24 117.1 99 62.6
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 6.2e-23 112.8 261 34.9
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.7e-20 104.8 175 35.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.9e-20 104.0 199 32.2
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.1e-19 102.1 64 73.4
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 2.4e-19 100.9 59 83.1
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 1.3e-17 95.1 63 73.0
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 4.8e-15 86.7 64 67.2
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.2e-13 82.0 60 68.3


User provided reference genes

Program Settings