Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.0e-157 558.5 291 100.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.8e-74 283.5 296 56.4
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.2e-71 272.3 296 55.7
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.4e-69 267.3 299 51.2
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 2.3e-69 266.5 298 53.4
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.3e-67 260.8 304 52.6
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.8e-66 256.9 298 51.3
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.2e-65 254.2 304 49.3
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.2e-65 254.2 278 53.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.5e-65 252.7 311 48.6
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.7e-64 250.4 283 51.6
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.9e-64 249.6 369 45.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 5.0e-64 248.8 300 48.0
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 1.1e-63 247.7 283 49.5
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.6e-62 242.7 296 53.0
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 8.0e-62 241.5 291 51.5
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.4e-61 240.7 318 47.2
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 3.1e-61 239.6 278 49.6
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.6e-60 236.5 296 50.3
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 4.9e-59 232.3 280 51.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 6.4e-59 231.9 393 42.2
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 2.4e-58 229.9 290 48.6
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 3.2e-58 229.6 311 45.0
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 9.2e-58 228.0 301 49.8
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 3.5e-57 226.1 300 46.0
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 4.6e-57 225.7 383 41.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.9e-56 222.6 280 48.9
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 1.1e-55 221.1 351 42.2
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 5.6e-55 218.8 306 46.4
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.2e-54 215.3 289 46.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 8.0e-54 214.9 338 43.2
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.8e-53 213.8 280 46.8
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.3e-53 213.4 305 43.0
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 3.1e-53 213.0 397 40.3
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-53 211.8 294 44.6
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.8e-53 211.8 302 44.4
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 8.9e-53 211.5 310 46.8
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.4e-52 209.5 294 43.2
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.4e-52 209.5 244 48.0
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.7e-51 207.2 299 44.8
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 3.7e-51 206.1 296 47.0
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.7e-51 206.1 268 47.0
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 3.7e-51 206.1 294 42.5
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.7e-51 206.1 347 42.1
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 1.1e-50 204.5 268 46.6
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.9e-50 203.8 338 42.6
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.9e-50 203.8 268 46.6
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.9e-50 203.8 372 40.3
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.4e-50 203.4 333 43.5
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.4e-50 203.4 341 41.9
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.4e-50 203.4 372 40.1
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 3.2e-50 203.0 320 40.0
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 4.1e-50 202.6 302 44.0
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 4.1e-50 202.6 305 44.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 5.4e-50 202.2 304 42.8
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 5.4e-50 202.2 293 43.0
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 9.2e-50 201.4 300 43.3
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.6e-49 200.7 287 42.5
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-49 200.7 292 42.8
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 3.5e-49 199.5 289 47.1
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.6e-49 199.1 295 42.4
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 7.8e-49 198.4 308 40.6
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.3e-48 197.6 301 40.9
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.3e-48 196.8 336 40.5
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 5.1e-48 195.7 296 42.9
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 8.6e-48 194.9 290 44.8
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.1e-47 194.5 315 41.9
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 3.3e-47 193.0 301 41.9
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 3.3e-47 193.0 295 41.4
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 5.6e-47 192.2 299 43.5
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 7.3e-47 191.8 294 44.2
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 7.3e-47 191.8 306 44.8
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.5e-47 191.4 285 39.6
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 9.5e-47 191.4 299 42.8
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.1e-46 190.3 317 41.0
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 3.6e-46 189.5 298 41.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 3.6e-46 189.5 370 38.1
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.4e-45 187.6 292 39.7
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.3e-45 186.8 347 38.6
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.3e-45 186.8 321 41.4
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 4.0e-45 186.0 344 39.5
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.2e-45 185.7 324 37.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 8.9e-45 184.9 355 38.9
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.6e-44 183.3 247 46.6
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.6e-44 183.3 336 39.6
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 5.8e-44 182.2 299 38.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.7e-43 180.6 299 38.5
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.7e-43 179.5 291 39.2
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 6.4e-43 178.7 333 39.9
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 8.3e-43 178.3 397 35.0
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.4e-42 177.6 298 40.3
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.4e-42 177.6 277 43.0
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.4e-42 176.8 156 60.9
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.1e-42 175.3 172 55.2
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 7.1e-42 175.3 172 55.2
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.1e-42 175.3 279 39.8
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-41 173.7 289 38.1
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 4.6e-41 172.6 259 39.8
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 7.8e-41 171.8 313 38.7
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.0e-40 169.9 281 39.5
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 8.6e-40 168.3 277 39.0
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 8.6e-40 168.3 288 42.7
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 4.3e-39 166.0 160 55.6
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 5.6e-39 165.6 353 36.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.2e-38 164.5 317 36.9
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 3.6e-38 162.9 277 41.5
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.4e-37 160.2 274 38.7
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.4e-37 160.2 212 48.6
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-37 158.7 288 36.8
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 6.8e-37 158.7 373 33.8
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.5e-36 157.5 275 38.5
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.5e-36 157.5 275 38.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.0e-36 157.1 265 40.0
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 2.0e-36 157.1 265 40.0
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 2.9e-35 153.3 236 39.4
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 1.1e-34 151.4 171 48.5
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.1e-34 151.4 275 37.8
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.9e-34 150.6 249 40.6
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 4.2e-34 149.4 237 38.8
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.6e-33 147.5 183 49.2
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 2.1e-33 147.1 162 48.8
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 3.5e-33 146.4 235 44.3
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.0e-33 145.6 277 37.5
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.0e-32 144.8 244 39.8
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.3e-32 144.4 251 41.8
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 3.9e-32 142.9 270 35.6
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 8.7e-32 141.7 260 39.2
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.9e-31 140.6 273 36.6
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.5e-31 140.2 280 38.2
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.5e-31 140.2 170 47.6
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 2.1e-30 137.1 331 32.6
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 8.1e-30 135.2 229 40.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.1e-29 134.8 225 40.0
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.0e-29 132.9 270 38.5
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 3.4e-28 129.8 226 39.4
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 3.4e-28 129.8 331 32.0
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.3e-27 127.9 247 37.7
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 2.2e-27 127.1 102 59.8
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.2e-26 123.2 259 35.5
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.1e-25 120.6 250 38.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.7e-25 120.2 267 33.3
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.0e-24 116.7 276 36.2
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 8.7e-24 115.2 277 34.7
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 3.3e-23 113.2 255 36.5
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-22 110.5 137 44.5
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 3.6e-22 109.8 270 34.1
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-20 104.0 91 50.5
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 4.5e-20 102.8 292 30.1
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.9e-18 97.4 144 41.0
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.9e-18 97.4 91 59.3
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.1e-18 95.5 239 33.9
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 7.9e-17 92.0 220 35.0
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.6e-14 84.3 76 50.0
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.5e-12 77.8 116 44.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 8.4e-11 72.0 55 58.2
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 2.5e-10 70.5 86 46.5
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 5.5e-10 69.3 80 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.2e-09 68.2 193 31.1
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-08 64.7 279 29.7
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.8e-08 64.3 98 45.9
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.9e-08 63.2 216 27.8
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 8.7e-08 62.0 120 34.2
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 2.8e-06 57.0 90 41.1
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 6.2e-06 55.8 79 41.8


User provided reference genes

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