Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.3e-75 285.4 141 100.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.1e-37 160.2 80 98.8
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 5.9e-26 121.3 108 65.7
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.1e-24 117.1 108 63.9
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.9e-24 116.3 108 62.0
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.2e-24 115.5 108 61.1
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 3.2e-24 115.5 108 61.1
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 4.2e-24 115.2 106 62.3
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.7e-23 112.5 108 59.3
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.7e-23 112.5 108 59.3
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.7e-23 112.5 108 60.2
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.6e-23 112.1 108 60.2
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 3.6e-23 112.1 108 61.1
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 6.1e-23 111.3 108 59.3
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 6.1e-23 111.3 108 59.3
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 6.1e-23 111.3 108 59.3
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 6.1e-23 111.3 108 59.3
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 7.9e-23 110.9 108 59.3
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.0e-22 110.5 110 59.1
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.0e-22 110.5 108 60.2
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 1.0e-22 110.5 108 60.2
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.0e-22 110.5 108 60.2
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.4e-22 110.2 108 60.2
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.4e-22 110.2 108 58.3
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 1.4e-22 110.2 108 60.2
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.4e-22 110.2 108 60.2
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 1.4e-22 110.2 108 59.3
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.8e-22 109.8 108 58.3
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.3e-22 109.4 107 59.8
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.3e-22 109.4 108 58.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 3.0e-22 109.0 108 58.3
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 3.9e-22 108.6 108 58.3
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.9e-22 108.6 106 57.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 5.1e-22 108.2 108 57.4
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.1e-22 108.2 108 56.5
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.1e-22 108.2 108 56.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 6.7e-22 107.8 108 57.4
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 6.7e-22 107.8 108 58.3
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.7e-22 107.8 108 58.3
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 6.7e-22 107.8 108 59.3
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 6.7e-22 107.8 108 57.4
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.7e-22 107.8 108 59.3
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 8.8e-22 107.5 108 59.3
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 8.8e-22 107.5 108 59.3
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 8.8e-22 107.5 108 58.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.1e-21 107.1 108 58.3
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.1e-21 107.1 108 57.4
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 58.3
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 58.3
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 58.3
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 58.3
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 58.3
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 59.3
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 58.3
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 56.5
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.5e-21 106.7 106 57.5
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.5e-21 106.7 108 57.4
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 2.0e-21 106.3 107 57.0
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 55.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 56.5
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 57.4
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 55.6
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 59.3
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 57.4
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 57.4
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.0e-21 106.3 108 57.4
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.6e-21 105.9 106 58.5
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.6e-21 105.9 108 55.6
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.6e-21 105.9 106 57.5
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 2.6e-21 105.9 107 56.1
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.6e-21 105.9 108 57.4
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.3e-21 105.5 108 57.4
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.3e-21 105.5 108 57.4
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 3.3e-21 105.5 108 56.5
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 3.3e-21 105.5 108 57.4
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.4e-21 105.1 108 56.5
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 4.4e-21 105.1 108 57.4
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 4.4e-21 105.1 108 56.5
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 4.4e-21 105.1 108 53.7
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 5.7e-21 104.8 108 56.5
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 5.7e-21 104.8 108 55.6
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 5.7e-21 104.8 108 56.5
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.7e-21 104.8 106 56.6
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 5.7e-21 104.8 108 57.4
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.4e-21 104.4 107 56.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 7.4e-21 104.4 108 56.5
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 7.4e-21 104.4 108 56.5
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 7.4e-21 104.4 108 55.6
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 9.7e-21 104.0 108 57.4
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 1.3e-20 103.6 108 56.5
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.3e-20 103.6 108 57.4
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.7e-20 103.2 107 56.1
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.7e-20 103.2 108 54.6
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.7e-20 103.2 108 56.5
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.7e-20 103.2 105 57.1
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.2e-20 102.8 108 57.4
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.2e-20 102.8 106 56.6
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.2e-20 102.8 108 56.5
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 2.8e-20 102.4 108 53.7
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-20 102.4 108 56.5
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.8e-20 102.4 108 56.5
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.8e-20 102.4 108 56.5
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 3.7e-20 102.1 108 54.6
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 3.7e-20 102.1 108 56.5
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 3.7e-20 102.1 108 53.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.7e-20 102.1 105 56.2
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 4.8e-20 101.7 108 53.7
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 4.8e-20 101.7 110 54.5
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 6.3e-20 101.3 108 52.8
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.3e-20 101.3 108 56.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 8.2e-20 100.9 108 53.7
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 8.2e-20 100.9 108 54.6
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 8.2e-20 100.9 108 53.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.1e-19 100.5 108 52.8
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.4e-19 100.1 108 52.8
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.4e-19 100.1 108 52.8
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.8e-19 99.8 95 60.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-19 99.8 108 54.6
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.8e-19 99.8 105 54.3
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.8e-19 99.8 105 54.3
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.4e-19 99.4 108 52.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 2.4e-19 99.4 90 62.2
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.4e-19 99.4 90 62.2
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 2.4e-19 99.4 90 62.2
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.4e-19 99.4 108 52.8
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 4.1e-19 98.6 108 52.8
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 5.3e-19 98.2 108 53.7
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 5.3e-19 98.2 108 52.8
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.3e-19 98.2 108 54.6
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 5.3e-19 98.2 108 53.7
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.5e-18 96.7 92 57.6
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.0e-18 96.3 108 52.8
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.6e-18 95.9 108 50.9
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.7e-15 85.9 145 41.4
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 3.0e-14 82.4 87 51.7
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 3.0e-14 82.4 87 51.7
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 3.9e-14 82.0 94 54.3
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.5e-13 80.1 108 42.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.2e-10 70.5 89 48.3
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.9e-09 65.9 44 72.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.0e-09 65.1 38 81.6
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 4.2e-08 62.0 38 81.6
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 9.4e-08 60.8 109 40.4
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 2.1e-07 59.7 40 67.5
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 6.1e-07 58.2 107 37.4
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 6.1e-07 58.2 107 37.4
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 8.0e-07 57.8 59 52.5
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 3.0e-06 55.8 67 50.7
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 3.0e-06 55.8 67 50.7


User provided reference genes

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