Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 5.1e-60 234.2 116 100.0
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 6.1e-21 104.4 117 46.2
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.2e-19 100.1 104 51.0
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 2.0e-19 99.4 106 52.8
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 7.5e-19 97.4 116 46.6
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 8.3e-18 94.0 114 50.9
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.4e-17 93.2 116 44.8
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 1.4e-17 93.2 113 43.4
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 1.8e-17 92.8 116 44.8
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.1e-17 92.0 111 49.5
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 1.2e-16 90.1 114 45.6
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 2.0e-16 89.4 121 43.8
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 1.3e-15 86.7 128 44.5
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 1.3e-15 86.7 124 42.7
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 1.7e-15 86.3 116 48.3
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 1.7e-15 86.3 104 42.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.9e-15 85.5 103 45.6
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 3.8e-15 85.1 118 41.5
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 5.0e-15 84.7 106 43.4
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 8.5e-15 84.0 109 45.9
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 8.5e-15 84.0 110 41.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 8.5e-15 84.0 110 40.0
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.1e-14 83.6 103 45.6
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 1.1e-14 83.6 111 44.1
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 1.1e-14 83.6 111 45.9
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.9e-14 82.8 122 43.4
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.9e-14 82.8 112 46.4
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 2.5e-14 82.4 107 43.9
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 3.2e-14 82.0 106 44.3
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 4.2e-14 81.6 109 42.2
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 4.2e-14 81.6 112 45.5
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 5.5e-14 81.3 109 38.5
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 9.4e-14 80.5 111 43.2
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-13 80.1 108 42.6
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 1.6e-13 79.7 106 43.4
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-13 79.7 106 43.4
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-13 79.7 106 43.4
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-13 79.7 106 43.4
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 2.7e-13 79.0 109 43.1
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.6e-13 78.6 108 39.8
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 3.6e-13 78.6 108 39.8
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 6.1e-13 77.8 126 37.3
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.1e-13 77.8 106 42.5
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 8.0e-13 77.4 105 41.9
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.4e-12 76.6 110 43.6
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.4e-12 76.6 111 42.3
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.4e-12 76.6 111 42.3
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.3e-12 75.9 106 41.5
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 4.0e-12 75.1 118 42.4
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 6.8e-12 74.3 118 44.1
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 6.8e-12 74.3 108 39.8
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 6.8e-12 74.3 106 38.7
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 6.8e-12 74.3 125 39.2
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 6.8e-12 74.3 124 39.5
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 1.5e-11 73.2 111 41.4
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.5e-11 73.2 104 42.3
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.0e-11 72.8 111 38.7
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 2.0e-11 72.8 114 39.5
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 2.0e-11 72.8 112 37.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 2.6e-11 72.4 104 40.4
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.6e-11 72.4 107 39.3
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 2.6e-11 72.4 110 41.8
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 5.7e-11 71.2 110 40.9
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 5.7e-11 71.2 114 38.6
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 9.8e-11 70.5 111 40.5
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 1.3e-10 70.1 119 35.3
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 1.7e-10 69.7 118 38.1
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.7e-10 69.7 106 40.6
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.2e-10 69.3 106 44.3
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.8e-10 68.9 111 40.5
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.8e-10 68.9 111 39.6
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 2.8e-10 68.9 115 39.1
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 8.3e-10 67.4 111 39.6
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.1e-09 67.0 105 40.0
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.4e-09 66.6 92 43.5
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.8e-09 66.2 124 37.1
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.4e-09 65.9 104 39.4
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.4e-09 65.9 111 38.7
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 2.4e-09 65.9 117 36.8
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 3.1e-09 65.5 104 42.3
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 3.1e-09 65.5 115 35.7
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 4.1e-09 65.1 104 42.3
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.1e-09 65.1 106 38.7
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 5.4e-09 64.7 113 37.2
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 5.4e-09 64.7 108 38.9
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 5.4e-09 64.7 106 38.7
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 9.1e-09 63.9 107 38.3
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 1.2e-08 63.5 42 66.7
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 1.6e-08 63.2 111 37.8
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 2.7e-08 62.4 108 38.0
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.7e-08 62.4 114 35.1
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 4.5e-08 61.6 114 36.8
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.9e-08 61.2 107 33.6
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 1.0e-07 60.5 106 33.0
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.3e-07 60.1 112 36.6
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.3e-07 60.1 104 36.5
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 1.3e-07 60.1 113 34.5
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.7e-07 59.7 112 35.7
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.7e-07 59.7 104 35.6
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 2.3e-07 59.3 109 32.1
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 3.8e-07 58.5 108 35.2
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.8e-07 58.5 116 34.5
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 3.8e-07 58.5 56 53.6
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 5.0e-07 58.2 33 78.8
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 8.6e-07 57.4 122 32.0
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.1e-06 57.0 101 36.6
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.5e-06 56.6 109 31.2
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-06 56.6 46 56.5
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-06 56.6 46 56.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.5e-06 55.8 109 31.2
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 2.5e-06 55.8 109 31.2
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.5e-06 55.8 116 33.6
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.3e-06 55.5 105 40.0
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 4.2e-06 55.1 121 33.1
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 5.5e-06 54.7 104 35.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 7.2e-06 54.3 111 32.4


User provided reference genes

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