Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.9e-165 584.7 292 100.0
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 3.5e-81 305.8 286 64.7
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 3.8e-80 302.4 285 63.5
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 3.4e-76 289.3 286 61.9
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 3.9e-64 249.2 287 52.6
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.1e-63 247.7 286 51.4
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 6.2e-62 241.9 286 50.0
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 2.3e-61 240.0 285 51.2
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.1e-61 239.6 285 49.5
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 3.1e-61 239.6 285 49.5
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.2e-60 237.7 285 49.5
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 1.2e-60 237.7 286 49.3
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 1.2e-60 237.7 286 49.7
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 2.0e-60 236.9 286 50.3
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.0e-60 236.9 286 49.0
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 3.4e-60 236.1 286 49.7
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 4.4e-60 235.7 286 49.3
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 5.8e-60 235.3 284 50.4
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 7.5e-60 235.0 286 48.3
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 7.5e-60 235.0 293 48.5
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 7.5e-60 235.0 286 49.7
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 9.8e-60 234.6 285 47.7
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 9.8e-60 234.6 285 49.5
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.3e-59 234.2 287 49.8
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 1.7e-59 233.8 286 50.7
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 2.2e-59 233.4 285 47.7
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 2.2e-59 233.4 287 49.5
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 2.9e-59 233.0 277 48.4
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 3.7e-59 232.6 286 49.0
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.7e-59 232.6 287 47.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 3.7e-59 232.6 287 47.7
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 3.7e-59 232.6 285 48.8
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 4.9e-59 232.3 284 49.6
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.9e-59 232.3 266 51.1
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 4.9e-59 232.3 285 49.8
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 4.9e-59 232.3 286 49.0
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 6.4e-59 231.9 288 49.0
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 6.4e-59 231.9 287 48.8
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.3e-59 231.5 286 48.6
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 1.1e-58 231.1 286 47.9
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 1.1e-58 231.1 292 47.6
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.4e-58 230.7 277 48.4
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.4e-58 230.7 286 48.6
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.4e-58 230.7 286 48.3
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 1.9e-58 230.3 284 48.9
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.9e-58 230.3 286 48.3
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 2.4e-58 229.9 286 46.5
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 2.4e-58 229.9 286 49.3
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.2e-58 229.6 272 50.4
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.1e-58 229.2 286 48.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 4.1e-58 229.2 286 47.9
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 4.1e-58 229.2 275 49.5
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 5.4e-58 228.8 288 48.6
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 7.1e-58 228.4 286 47.9
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 9.2e-58 228.0 286 47.6
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 9.2e-58 228.0 286 47.9
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.2e-57 227.6 295 48.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 1.2e-57 227.6 292 46.6
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.2e-57 227.6 287 47.0
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.6e-57 227.3 292 46.6
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 2.1e-57 226.9 285 45.6
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.7e-57 226.5 287 47.0
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 2.7e-57 226.5 286 47.2
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 3.5e-57 226.1 282 47.5
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 3.5e-57 226.1 273 46.9
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 3.5e-57 226.1 282 47.5
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 6.0e-57 225.3 284 46.8
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 6.0e-57 225.3 284 46.8
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 6.0e-57 225.3 284 46.8
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 6.0e-57 225.3 284 46.8
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 6.0e-57 225.3 286 47.2
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 6.0e-57 225.3 286 46.2
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 7.8e-57 224.9 286 46.9
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.0e-56 224.6 273 49.5
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 1.3e-56 224.2 292 45.9
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.3e-56 224.2 286 47.6
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 1.3e-56 224.2 286 47.2
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.9e-56 222.6 297 47.1
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.9e-56 222.6 286 47.2
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.3e-55 219.2 266 48.9
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 4.3e-55 219.2 280 46.4
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 7.3e-55 218.4 286 48.3
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 9.5e-55 218.0 266 48.5
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.1e-54 216.9 272 47.1
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 2.1e-54 216.9 277 46.9
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 6.2e-54 215.3 286 47.2
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 1.1e-53 214.5 284 47.2
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 2.3e-53 213.4 267 48.3
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 3.1e-53 213.0 294 45.2
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 6.8e-53 211.8 289 45.0
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.2e-52 211.1 320 42.8
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 7.6e-52 208.4 285 45.6
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 9.9e-52 208.0 272 43.8
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.7e-49 199.9 276 44.6
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.0e-48 198.0 289 42.6
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 1.5e-47 194.1 270 43.7
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 2.5e-47 193.4 267 45.3
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 2.5e-47 193.4 283 40.6
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 4.0e-45 186.0 296 42.2
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 5.8e-44 182.2 252 45.6
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 2.4e-42 176.8 243 46.1
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.0e-40 171.4 94 94.7
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.0e-40 171.4 237 44.7
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 2.3e-40 170.2 285 39.3
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 5.1e-40 169.1 285 37.5
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 2.5e-39 166.8 242 43.0
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 6.2e-38 162.2 275 36.0
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 8.1e-38 161.8 294 38.1
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.6e-36 156.8 85 92.9
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 4.2e-34 149.4 266 36.1
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 2.3e-32 143.7 234 39.3
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.8e-30 136.0 220 41.8
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.8e-30 136.0 93 73.1
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 4.0e-29 132.9 84 77.4
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.6e-28 130.2 78 78.2
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 9.9e-28 128.3 92 68.5
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.9e-27 126.7 80 71.2
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.2e-26 123.2 94 63.8
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.7e-25 120.2 256 35.9
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.6e-25 119.4 84 65.5
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.3e-24 117.9 94 64.9
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.5e-23 113.6 88 62.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.6e-22 110.9 93 63.4
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 2.8e-22 110.2 86 68.6
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 1.2e-20 104.8 84 65.5
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 6.5e-19 99.0 93 55.9
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 3.9e-16 89.7 69 68.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.2e-11 73.9 61 55.7
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 1.8e-08 64.3 39 76.9
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 1.1e-07 61.6 40 80.0
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.5e-07 61.2 37 73.0


User provided reference genes

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