Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 3.3e-234 814.7 412 100.0
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 5.7e-231 803.9 406 100.0
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 8.7e-195 683.7 450 81.8
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 9.6e-194 680.2 450 81.1
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 6.4e-190 667.5 450 80.2
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 1.1e-189 666.8 442 79.9
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 1.4e-189 666.4 450 79.3
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 1.9e-189 666.0 450 78.7
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 2.4e-189 665.6 450 78.7
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 2.1e-188 662.5 450 78.2
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 2.7e-188 662.1 450 78.2
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 3.5e-188 661.8 450 78.7
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 7.8e-188 660.6 450 78.7
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 1.0e-187 660.2 448 78.8
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.0e-187 660.2 450 78.4
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 1.0e-187 660.2 450 78.4
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.3e-187 659.8 450 78.0
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 2.3e-187 659.1 448 78.6
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 3.0e-187 658.7 450 78.0
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 3.9e-187 658.3 450 78.2
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 1.5e-186 656.4 450 78.0
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 2.5e-186 655.6 448 78.1
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 2.5e-186 655.6 450 78.0
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 7.3e-186 654.1 448 78.1
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 7.3e-186 654.1 448 78.1
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 7.3e-186 654.1 448 77.9
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 9.6e-186 653.7 447 78.1
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 9.6e-186 653.7 448 77.7
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 1.3e-185 653.3 450 77.8
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 2.8e-185 652.1 450 77.3
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 2.8e-185 652.1 448 77.9
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 6.2e-185 651.0 448 77.7
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 1.1e-184 650.2 448 77.0
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 1.1e-184 650.2 448 77.0
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 2.4e-184 649.0 462 74.9
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 3.1e-184 648.7 448 77.0
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 4.0e-184 648.3 448 76.8
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 1.2e-183 646.7 450 77.3
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 2.0e-183 646.0 445 77.1
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 4.5e-183 644.8 448 76.3
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 5.8e-183 644.4 448 76.6
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 7.6e-183 644.0 448 76.3
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 7.6e-183 644.0 448 76.3
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 9.9e-183 643.7 448 76.1
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 9.9e-183 643.7 448 76.6
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 9.9e-183 643.7 448 76.1
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 9.9e-183 643.7 450 76.0
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 1.3e-182 643.3 451 76.1
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 1.3e-182 643.3 450 76.2
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.3e-182 643.3 450 76.2
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 1.3e-182 643.3 450 76.2
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 2.2e-182 642.5 448 77.0
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 2.9e-182 642.1 448 76.8
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 4.9e-182 641.3 451 75.6
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 1.1e-181 640.2 448 76.6
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 1.9e-181 639.4 448 76.3
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 3.2e-181 638.6 448 75.7
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 7.1e-181 637.5 446 75.8
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 9.3e-181 637.1 448 75.9
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 9.3e-181 637.1 448 75.7
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 9.3e-181 637.1 448 75.7
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 1.6e-180 636.3 442 75.8
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 1.6e-180 636.3 448 75.4
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 2.1e-180 636.0 447 76.3
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 2.1e-180 636.0 447 76.3
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 2.1e-180 636.0 451 74.5
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 2.1e-180 636.0 448 75.7
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 3.5e-180 635.2 448 75.0
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 3.5e-180 635.2 446 76.0
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 4.6e-180 634.8 448 75.0
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 4.6e-180 634.8 445 75.7
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 7.9e-180 634.0 445 75.7
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 7.9e-180 634.0 448 75.4
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 1.0e-179 633.6 448 75.7
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 3.0e-179 632.1 448 75.2
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 5.1e-179 631.3 456 73.9
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 1.1e-178 630.2 448 74.3
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 1.1e-178 630.2 448 74.3
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 1.5e-178 629.8 448 74.8
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 2.5e-178 629.0 447 75.6
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 4.3e-178 628.2 448 74.3
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 5.6e-178 627.9 448 73.9
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 9.6e-178 627.1 447 75.6
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.6e-177 626.3 442 75.8
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.6e-177 626.3 448 74.6
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 2.1e-177 625.9 448 74.1
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.1e-177 625.9 448 74.8
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 6.2e-177 624.4 448 74.8
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 6.2e-177 624.4 448 75.0
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 8.1e-177 624.0 448 73.9
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 1.1e-176 623.6 448 73.7
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 1.8e-176 622.9 448 73.2
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 3.1e-176 622.1 448 73.0
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 4.5e-175 618.2 445 73.5
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 5.8e-175 617.8 448 73.4
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.1e-173 613.6 442 73.1
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 1.4e-173 613.2 448 72.3
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.5e-173 612.5 446 73.3
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 6.0e-172 607.8 448 72.3
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 7.9e-172 607.4 487 68.6
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 1.0e-171 607.1 448 71.9
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 3.0e-171 605.5 429 74.4
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 5.1e-171 604.7 448 72.1
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 1.1e-170 603.6 445 72.6
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 1.9e-170 602.8 451 71.6
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 2.5e-170 602.4 482 68.9
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 9.6e-170 600.5 421 77.7
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 1.3e-169 600.1 448 71.2
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 3.7e-169 598.6 523 63.9
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 6.2e-169 597.8 448 71.2
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 6.2e-169 597.8 453 72.2
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 3.1e-168 595.5 448 71.0
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 4.1e-168 595.1 449 70.8
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 6.9e-168 594.3 448 71.0
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 9.0e-168 594.0 448 70.3
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 2.6e-167 592.4 448 70.8
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 5.8e-167 591.3 448 70.3
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 5.8e-167 591.3 448 70.5
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 1.3e-166 590.1 448 70.3
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 1.3e-166 590.1 447 72.0
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 1.7e-166 589.7 444 70.5
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 1.7e-166 589.7 445 70.6
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 3.8e-166 588.6 448 70.3
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 6.5e-166 587.8 445 70.6
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 6.5e-166 587.8 448 70.1
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 1.4e-165 586.6 445 70.1
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 1.9e-165 586.3 415 75.7
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 2.5e-165 585.9 442 70.8
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 2.5e-165 585.9 407 75.7
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 3.0e-163 578.9 447 68.7
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 3.3e-162 575.5 450 68.7
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.6e-161 573.2 387 78.3
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 3.7e-161 572.0 446 69.5
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 1.8e-160 569.7 403 74.4
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 4.5e-159 565.1 442 69.9
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 8.8e-155 550.8 442 68.3
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 7.4e-154 547.7 406 73.9
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 7.7e-151 537.7 445 67.0
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 3.2e-149 532.3 450 64.4
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 4.4e-146 521.9 410 69.8
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 2.6e-143 512.7 402 70.1
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 2.2e-142 509.6 382 73.0
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 6.5e-142 508.1 370 74.6
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 1.1e-141 507.3 387 70.8
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 7.2e-141 504.6 307 85.3
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 6.3e-129 464.9 448 55.4
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 2.6e-122 443.0 438 56.4
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 1.8e-112 410.2 447 52.1
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 1.2e-111 407.5 414 54.6
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.7e-111 406.4 287 74.6
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 2.6e-106 389.8 223 87.9
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 6.4e-105 385.2 215 89.8
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 3.2e-96 356.3 363 57.6
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 9.5e-93 344.7 237 78.1
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 2.1e-92 343.6 239 74.9
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.7e-92 342.4 281 66.5
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 1.0e-86 324.7 238 71.8
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 4.7e-84 315.8 179 87.2
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 3.9e-78 296.2 421 39.7
CDE04G0576 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 5.8e-74 282.3 242 64.5
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 1.1e-72 278.1 151 90.1
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 2.1e-68 263.8 415 42.4
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 1.0e-62 245.0 132 88.6
Oeu027218.1 Olea europaea HOM05D003843 ORTHO05D004646 1.3e-62 244.6 165 78.2
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 3.7e-60 236.5 324 46.9
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 1.1e-53 214.9 151 76.2
FAN22G0723 Fragaria x ananassa HOM05D003843 ORTHO05D004646 7.4e-53 212.2 115 91.3
Psat7g060600 Pisum sativum HOM05D003843 ORTHO05D004646 8.2e-52 208.8 149 75.2
MBI13_g30274_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 7.2e-48 195.7 105 92.4
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 3.2e-40 170.2 384 32.6
CsaV3_4G017300 Cucumis sativus L. HOM05D000055 ORTHO05D000057 1.2e-34 151.8 77 100.0
EL10Ac1g01679 Beta vulgaris HOM05D003843 ORTHO05D004646 7.2e-32 142.5 76 92.1
Sopen11g024640 Solanum pennellii HOM05D003843 ORTHO05D004646 5.0e-25 119.8 67 86.6
FAN25G1295 Fragaria x ananassa HOM05D003843 ORTHO05D004646 2.5e-16 90.9 116 50.9
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 7.2e-16 89.4 67 76.1
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 1.0e-14 85.5 306 27.1
SHI24968 Sapria himalayana HOM05D003843 ORTHO05D004646 4.0e-14 83.6 59 76.3
Lsat_1_v5_gn_4_91020 Lactuca sativa HOM05D000919 ORTHO05D001187 7.7e-10 69.3 40 80.0
Nitab4.5_0000062g0380 Nicotiana tabacum HOM05D003843 ORTHO05D284225 7.2e-08 62.8 37 83.8
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 9.5e-08 62.4 50 54.0
Cc00_g15040 Coffea canephora HOM05D003843 ORTHO05D004646 6.1e-07 59.7 54 63.0


User provided reference genes

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