Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG227970 Cucumis sativus L. HOM05D000579 ORTHO05D000741 4.6e-51 204.1 94 100.0
ClCG07G014100 Citrullus lanatus HOM05D000579 ORTHO05D000741 1.2e-19 99.8 89 60.7
Prupe.3G040000 Prunus persica HOM05D000579 ORTHO05D000741 9.4e-12 73.6 80 45.0
PSO724G0924 Papaver somniferum HOM05D000579 ORTHO05D000741 1.6e-11 72.8 77 45.5
Rhsim08G0239500 Rhododendron simsii HOM05D000579 ORTHO05D000741 1.6e-11 72.8 74 51.4
HanXRQChr09g0276931 Helianthus annuus HOM05D000579 ORTHO05D000741 1.4e-10 69.7 82 43.9
CSS0045775 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 2.3e-10 68.9 74 50.0
Cc04_g01310 Coffea canephora HOM05D000579 ORTHO05D000741 2.3e-10 68.9 76 44.7
Eucgr.J02811 Eucalyptus grandis HOM05D000579 ORTHO05D000741 2.3e-10 68.9 75 46.7
FvH4_6g34830 Fragaria vesca HOM05D000579 ORTHO05D000741 2.3e-10 68.9 80 43.8
FAN02G1140 Fragaria x ananassa HOM05D000579 ORTHO05D000741 3.0e-10 68.6 82 43.9
FAN05G4758 Fragaria x ananassa HOM05D000579 ORTHO05D000741 3.0e-10 68.6 82 43.9
FAN09G1604 Fragaria x ananassa HOM05D000579 ORTHO05D000741 3.0e-10 68.6 80 43.8
MD09G1181900 Malus domestica HOM05D000579 ORTHO05D000741 3.0e-10 68.6 80 41.2
RcHm_v2.0_Chr2g0145661 Rosa chinensis HOM05D000579 ORTHO05D000741 3.9e-10 68.2 82 43.9
FAN14G4913 Fragaria x ananassa HOM05D000579 ORTHO05D000741 5.1e-10 67.8 80 43.8
TAR383G0579 Trochodendron aralioides HOM05D000579 ORTHO05D000741 5.1e-10 67.8 76 40.8
FAN05G1238 Fragaria x ananassa HOM05D000579 ORTHO05D000741 6.7e-10 67.4 80 42.5
PSO135G0863 Papaver somniferum HOM05D000579 ORTHO05D000741 6.7e-10 67.4 76 43.4
RcHm_v2.0_Chr2g0126411 Rosa chinensis HOM05D000579 ORTHO05D000741 6.7e-10 67.4 80 42.5
CANSAT56G0174 Cannabis sativa HOM05D000579 ORTHO05D000741 8.8e-10 67.0 82 41.5
Lsat_1_v5_gn_4_93041 Lactuca sativa HOM05D000579 ORTHO05D000741 1.1e-09 66.6 82 42.7
FvH4_6g34800 Fragaria vesca HOM05D000579 ORTHO05D000741 1.5e-09 66.2 82 41.5
RcHm_v2.0_Chr2g0145691 Rosa chinensis HOM05D000579 ORTHO05D000741 1.5e-09 66.2 80 42.5
Migut.I01077 Erythranthe guttata HOM05D000579 ORTHO05D000741 2.5e-09 65.5 74 45.9
DCAR_007647 Daucus carota HOM05D000579 ORTHO05D000741 3.3e-09 65.1 75 48.0
TWI79G0832 Tripterygium wilfordii HOM05D000579 ORTHO05D000741 4.3e-09 64.7 76 42.1
MD09G1182500 Malus domestica HOM05D000579 ORTHO05D000741 5.7e-09 64.3 82 45.1
Lj9A523T60 Lonicera japonica HOM05D000579 ORTHO05D000741 7.4e-09 63.9 80 45.0
CSS0030503 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 1.3e-08 63.2 80 40.0
Ciclev10026135m.g Citrus clementina HOM05D000579 ORTHO05D000741 1.3e-08 63.2 82 41.5
CSS0035034 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 1.7e-08 62.8 74 41.9
CDE06G0166 Ceratophyllum demersum HOM05D000579 ORTHO05D000741 1.7e-08 62.8 76 39.5
Potri.009G117100 Populus trichocarpa HOM05D000579 ORTHO05D002295 1.7e-08 62.8 87 36.8
Actinidia32190 Actinidia chinensis HOM05D000579 ORTHO05D000741 2.8e-08 62.0 74 44.6
HanXRQChr04g0094701 Helianthus annuus HOM05D000579 ORTHO05D000741 2.8e-08 62.0 74 45.9
Potri.001G168600 Populus trichocarpa HOM05D000579 ORTHO05D000741 2.8e-08 62.0 80 38.8
CARHR191580 Cardamine hirsuta HOM05D000579 ORTHO05D000741 3.7e-08 61.6 80 41.2
CSS0028276 Camellia sinensis var. sinensis HOM05D000579 ORTHO05D000741 6.3e-08 60.8 80 40.0
Duzib192G0643 Durio zibethinus HOM05D000579 ORTHO05D000741 8.2e-08 60.5 80 40.0
Lsat_1_v5_gn_1_38221 Lactuca sativa HOM05D000579 ORTHO05D000741 8.2e-08 60.5 80 42.5
Thecc.06G120900 Theobroma cacao HOM05D000579 ORTHO05D000741 8.2e-08 60.5 80 38.8
TWI31G0166 Tripterygium wilfordii HOM05D000579 ORTHO05D000741 1.1e-07 60.1 76 38.2
Carub.0006s1959 Capsella rubella HOM05D000579 ORTHO05D000741 1.4e-07 59.7 77 40.3
CiPaw.05G065300 Carya illinoinensis HOM05D000579 ORTHO05D002295 1.4e-07 59.7 87 35.6
CiPaw.05G065500 Carya illinoinensis HOM05D000579 ORTHO05D002295 1.4e-07 59.7 87 35.6
TWI31G1084 Tripterygium wilfordii HOM05D000579 ORTHO05D000741 1.4e-07 59.7 76 40.8
TAR376G0021 Trochodendron aralioides HOM05D000579 ORTHO05D002295 1.4e-07 59.7 83 38.6
MBI19_g43889_MAGBIO Magnolia biondii HOM05D000579 ORTHO05D000741 1.8e-07 59.3 76 44.7
PSO421G0075 Papaver somniferum HOM05D000579 ORTHO05D000741 1.8e-07 59.3 81 39.5
arahy.Tifrunner.gnm1.ann1.GMVQ5Z Arachis hypogaea HOM05D000579 ORTHO05D002295 2.4e-07 58.9 90 37.8
COL.COLO4_30751 Corchorus olitorius HOM05D000579 ORTHO05D000741 2.4e-07 58.9 80 38.8
Hma1.2p1_0278F.1_g111810 Hydrangea macrophylla HOM05D000579 ORTHO05D000741 2.4e-07 58.9 77 41.6
Manes.07G073600 Manihot esculenta HOM05D000579 ORTHO05D000741 2.4e-07 58.9 73 41.1
Sabra01G0142100 Salix brachista HOM05D000579 ORTHO05D000741 2.4e-07 58.9 80 37.5
ECA247G4000 Erigeron canadensis HOM05D001216 ORTHO05D003822 3.1e-07 58.5 74 43.2
Haze_02396 Corylus avellana HOM05D000579 ORTHO05D002295 4.1e-07 58.2 87 35.6
Sed0010797 Sechium edule HOM05D000579 ORTHO05D002295 4.1e-07 58.2 86 40.7
Aqoxy7G01031 Aquilegia oxysepala HOM05D000579 ORTHO05D000741 5.3e-07 57.8 87 39.1
MELO3C016390.2 Cucumis melo HOM05D000579 ORTHO05D002295 5.3e-07 57.8 80 40.0
Sabra09G0089900 Salix brachista HOM05D000579 ORTHO05D002295 5.3e-07 57.8 82 34.1
Gohir.A06G193700 Gossypium hirsutum HOM05D000579 ORTHO05D000741 6.9e-07 57.4 80 36.2
arahy.Tifrunner.gnm1.ann1.XV2LY8 Arachis hypogaea HOM05D000579 ORTHO05D002295 9.1e-07 57.0 77 40.3
BcaC03g13847 Brassica carinata HOM05D016726 ORTHO05D018719 9.1e-07 57.0 88 38.6
BolC2t07122H Brassica oleracea HOM05D000579 ORTHO05D000741 9.1e-07 57.0 88 38.6
Lalb_Chr09g0322351 Lupinus albus HOM05D000579 ORTHO05D002295 9.1e-07 57.0 77 40.3
SalBow1G0015 Salvia bowleyana HOM05D000579 ORTHO05D002295 9.1e-07 57.0 80 38.8
Sopen02g029880 Solanum pennellii HOM05D000579 ORTHO05D002295 9.1e-07 57.0 76 38.2
CAN.G358.80 Capsicum annuum HOM05D000579 ORTHO05D002295 1.2e-06 56.6 80 37.5
Cc08_g01020 Coffea canephora HOM05D000579 ORTHO05D000741 1.2e-06 56.6 76 36.8
AT5G21950 Arabidopsis thaliana HOM05D000579 ORTHO05D000741 1.5e-06 56.2 82 36.6
BNapus_Darmor_BZH_scaffold_38p00970 Brassica napus HOM05D000579 ORTHO05D000741 1.5e-06 56.2 88 38.6
BraA02t05630Z Brassica rapa HOM05D000579 ORTHO05D000741 1.5e-06 56.2 88 38.6
Psat2g159160 Pisum sativum HOM05D000579 ORTHO05D002295 1.5e-06 56.2 76 38.2
Rhsim08G0117900 Rhododendron simsii HOM05D000579 ORTHO05D002295 1.5e-06 56.2 83 36.1
RhsimUnG0099700 Rhododendron simsii HOM05D000579 ORTHO05D002295 1.5e-06 56.2 83 36.1
Solyc02g085180.5.1 Solanum lycopersicum HOM05D000579 ORTHO05D002295 1.5e-06 56.2 76 38.2
BcaB08g36464 Brassica carinata HOM05D000579 ORTHO05D000741 2.0e-06 55.8 82 37.8
Cfa004990 Carpinus fangiana HOM05D000579 ORTHO05D002295 2.0e-06 55.8 87 34.5
PSO421G0330 Papaver somniferum HOM05D000579 ORTHO05D000741 2.0e-06 55.8 83 36.1
Psat0s4616g0080 Pisum sativum HOM05D000579 ORTHO05D002295 2.0e-06 55.8 76 36.8
QL06p046315 Quercus lobata HOM05D000579 ORTHO05D002295 2.0e-06 55.8 76 40.8
GSVIVG01018950001 Vitis vinifera HOM05D000579 ORTHO05D002295 2.0e-06 55.8 76 38.2
MD02G1146700 Malus domestica HOM05D000579 ORTHO05D002295 2.6e-06 55.5 76 40.8
Manes.02G094200 Manihot esculenta HOM05D000579 ORTHO05D002295 2.6e-06 55.5 86 39.5
Oeu024209.1 Olea europaea HOM05D000579 ORTHO05D000741 2.6e-06 55.5 86 36.0
Oeu063199.1 Olea europaea HOM05D000579 ORTHO05D002295 2.6e-06 55.5 76 36.8
Peaxi162Scf00366g00216 Petunia axillaris HOM05D000579 ORTHO05D002295 2.6e-06 55.5 81 38.3
Rhsim01G0182500 Rhododendron simsii HOM05D000579 ORTHO05D000741 2.6e-06 55.5 76 39.5
Medtr5g020250 Medicago truncatula HOM05D000579 ORTHO05D002295 3.4e-06 55.1 76 36.8
Potri.009G117000 Populus trichocarpa HOM05D000579 ORTHO05D002295 3.4e-06 55.1 87 34.5
Aa31LG1G13470 Aethionema arabicum HOM05D000579 ORTHO05D000741 4.5e-06 54.7 79 38.0
AL6G32910 Arabidopsis lyrata HOM05D000579 ORTHO05D000741 4.5e-06 54.7 82 34.1
A10p18770 Brassica napus HOM05D000579 ORTHO05D000741 4.5e-06 54.7 84 35.7
BraA10t43957Z Brassica rapa HOM05D000579 ORTHO05D000741 4.5e-06 54.7 84 35.7
AUR62009887 Chenopodium quinoa HOM05D000579 ORTHO05D000741 4.5e-06 54.7 81 37.0
Medtr5g020260 Medicago truncatula HOM05D000579 ORTHO05D002295 4.5e-06 54.7 85 36.5
Psat2g159240 Pisum sativum HOM05D000579 ORTHO05D002295 4.5e-06 54.7 84 38.1
PGR102G2205 Punica granatum HOM05D000579 ORTHO05D002295 4.5e-06 54.7 76 38.2
Sabra09G0089800 Salix brachista HOM05D000579 ORTHO05D002295 4.5e-06 54.7 76 39.5
PGSC0003DMG400012994 Solanum tuberosum HOM05D000579 ORTHO05D000741 4.5e-06 54.7 81 35.8
Thecc.02G084300 Theobroma cacao HOM05D000579 ORTHO05D002295 4.5e-06 54.7 78 37.2
Ah.01g019310 Amaranthus hybridus HOM05D000579 ORTHO05D002295 5.9e-06 54.3 86 36.0
MD15G1260700 Malus domestica HOM05D000579 ORTHO05D002295 5.9e-06 54.3 76 38.2
PSO675G0295 Papaver somniferum HOM05D000579 ORTHO05D002295 5.9e-06 54.3 83 34.9
CsaV3_4G005590 Cucumis sativus L. HOM05D000579 ORTHO05D002295 7.7e-06 53.9 72 41.7
Lalb_Chr09g0322331 Lupinus albus HOM05D000579 ORTHO05D002295 7.7e-06 53.9 76 36.8
Oeu031681.1 Olea europaea HOM05D000579 ORTHO05D000741 7.7e-06 53.9 86 36.0
PSO541G0571 Papaver somniferum HOM05D000579 ORTHO05D002295 7.7e-06 53.9 83 33.7
Prupe.7G155500 Prunus persica HOM05D000579 ORTHO05D002295 7.7e-06 53.9 81 35.8
Sabra04G0103700 Salix brachista HOM05D000579 ORTHO05D002295 7.7e-06 53.9 79 35.4
Sopen08g016620 Solanum pennellii HOM05D000579 ORTHO05D000741 7.7e-06 53.9 81 35.8
TPR.G24139 Trifolium pratense HOM05D000579 ORTHO05D002295 7.7e-06 53.9 76 40.8
TWI09G1058 Tripterygium wilfordii HOM05D000579 ORTHO05D002295 7.7e-06 53.9 76 39.5


User provided reference genes

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