Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 7.1e-59 230.3 112 100.0
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 4.8e-39 164.5 96 82.3
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.0e-33 146.7 77 89.6
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.0e-28 130.2 106 67.0
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.6e-26 121.7 60 93.3
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 4.8e-23 111.3 60 85.0
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.0e-20 103.6 59 78.0
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.1e-19 100.1 60 71.7
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 4.2e-19 98.2 56 76.8
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 7.2e-19 97.4 60 70.0
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 7.2e-19 97.4 60 68.3
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 9.4e-19 97.1 60 70.0
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 1.2e-18 96.7 60 73.3
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 1.6e-18 96.3 58 74.1
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 2.7e-18 95.5 60 68.3
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 3.6e-18 95.1 56 73.2
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 4.7e-18 94.7 103 50.5
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 4.7e-18 94.7 60 68.3
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 4.7e-18 94.7 56 75.0
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 6.1e-18 94.4 87 55.2
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 6.1e-18 94.4 60 68.3
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 6.1e-18 94.4 60 70.0
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 6.1e-18 94.4 56 75.0
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 8.0e-18 94.0 60 66.7
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.4e-17 93.2 60 68.3
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 1.4e-17 93.2 59 67.8
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 1.8e-17 92.8 58 67.2
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 2.3e-17 92.4 60 68.3
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.0e-17 92.0 60 70.0
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 3.0e-17 92.0 54 72.2
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 4.0e-17 91.7 59 64.4
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 4.0e-17 91.7 60 70.0
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 5.2e-17 91.3 60 68.3
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 5.2e-17 91.3 56 69.6
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 5.2e-17 91.3 60 65.0
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 5.2e-17 91.3 60 65.0
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 8.8e-17 90.5 60 68.3
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.2e-16 90.1 70 55.7
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 1.2e-16 90.1 58 67.2
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 1.2e-16 90.1 60 63.3
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 1.2e-16 90.1 60 70.0
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.5e-16 89.7 59 67.8
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 2.0e-16 89.4 60 68.3
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 2.0e-16 89.4 58 63.8
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 2.6e-16 89.0 58 63.8
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 2.6e-16 89.0 62 61.3
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.4e-16 88.2 38 100.0
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 4.4e-16 88.2 62 61.3
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 4.4e-16 88.2 58 65.5
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.7e-16 87.8 56 67.9
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.7e-16 87.8 56 67.9
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 5.7e-16 87.8 58 65.5
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 5.7e-16 87.8 58 65.5
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 5.7e-16 87.8 54 74.1
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 7.5e-16 87.4 60 63.3
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.5e-16 87.4 60 63.3
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.5e-16 87.4 60 63.3
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.5e-16 87.4 60 63.3
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 7.5e-16 87.4 60 63.3
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 7.5e-16 87.4 60 65.0
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 7.5e-16 87.4 54 70.4
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 7.5e-16 87.4 54 70.4
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 9.7e-16 87.0 58 63.8
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.3e-15 86.7 56 69.6
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 1.7e-15 86.3 58 65.5
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.2e-15 85.9 60 61.7
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 2.8e-15 85.5 56 66.1
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 2.8e-15 85.5 58 62.1
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 2.8e-15 85.5 56 66.1
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 3.7e-15 85.1 54 68.5
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 3.7e-15 85.1 60 63.3
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 3.7e-15 85.1 60 63.3
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 6.3e-15 84.3 47 76.6
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 8.2e-15 84.0 54 66.7
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 8.2e-15 84.0 54 66.7
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 8.2e-15 84.0 59 62.7
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 8.2e-15 84.0 54 68.5
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 1.1e-14 83.6 54 66.7
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.1e-14 83.6 60 61.7
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.4e-14 83.2 60 61.7
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.8e-14 82.8 56 64.3
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 3.1e-14 82.0 54 64.8
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 7.0e-14 80.9 54 68.5
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 9.1e-14 80.5 54 64.8
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 9.1e-14 80.5 54 64.8
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 9.1e-14 80.5 56 62.5
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.2e-13 80.1 54 64.8
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 2.0e-13 79.3 60 61.7
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 3.5e-13 78.6 54 63.0
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 4.5e-13 78.2 54 61.1
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 3.6e-10 68.6 45 62.2
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 1.4e-06 56.6 51 51.0


User provided reference genes

Program Settings