Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.2e-115 419.1 230 100.0
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 8.0e-89 330.9 209 82.3
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 6.5e-83 311.2 235 70.2
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 1.1e-74 283.9 234 63.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.5e-74 283.5 251 71.3
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.5e-58 227.6 202 64.4
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.5e-58 227.6 202 64.4
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 2.0e-47 193.4 234 47.4
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.6e-47 193.0 207 50.7
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.2e-46 189.9 234 46.2
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 4.9e-46 188.7 237 44.3
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.9e-45 186.8 237 45.1
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 3.2e-45 186.0 257 42.8
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 5.4e-45 185.3 236 43.6
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 5.4e-45 185.3 238 45.0
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 5.4e-45 185.3 238 46.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 7.0e-45 184.9 210 49.5
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.2e-44 184.1 234 45.7
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.2e-44 184.1 238 45.0
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 3.5e-44 182.6 232 44.8
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 4.6e-44 182.2 236 44.1
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 7.8e-44 181.4 235 46.4
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.0e-43 181.0 237 44.3
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.0e-43 181.0 234 44.9
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.7e-43 180.3 231 44.6
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.3e-43 179.9 233 45.5
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 3.9e-43 179.1 239 43.5
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 5.1e-43 178.7 226 44.7
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 5.1e-43 178.7 238 42.9
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 6.6e-43 178.3 229 45.4
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 8.6e-43 177.9 230 43.9
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.5e-42 177.2 207 47.8
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.9e-42 176.8 237 44.3
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 4.3e-42 175.6 234 44.0
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 7.3e-42 174.9 241 42.3
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 7.3e-42 174.9 244 43.0
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 9.5e-42 174.5 234 43.2
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.2e-41 174.1 230 44.3
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.2e-41 174.1 241 44.8
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.1e-41 173.3 235 43.8
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 2.1e-41 173.3 230 44.3
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.8e-41 172.9 236 44.5
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 4.7e-41 172.2 230 43.9
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 4.7e-41 172.2 230 43.9
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 6.2e-41 171.8 235 45.1
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 8.1e-41 171.4 231 43.3
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 1.4e-40 170.6 232 41.4
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 1.4e-40 170.6 203 47.3
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.8e-40 170.2 230 43.0
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 2.3e-40 169.9 237 42.2
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 3.1e-40 169.5 238 42.0
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 5.2e-40 168.7 236 43.6
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 6.8e-40 168.3 236 42.4
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.2e-39 167.5 232 40.9
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.5e-39 167.2 239 41.8
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 2.0e-39 166.8 263 39.2
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.0e-39 166.8 241 42.7
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 3.4e-39 166.0 232 40.9
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 7.5e-39 164.9 230 40.4
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 7.5e-39 164.9 229 42.8
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 4.9e-38 162.2 261 40.6
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 4.9e-38 162.2 264 39.8
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 8.3e-38 161.4 226 42.9
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.4e-37 159.8 223 41.7
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 2.4e-37 159.8 264 40.2
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.1e-37 158.3 227 40.1
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.2e-36 157.5 240 39.6
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.1e-36 156.8 243 40.7
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.1e-36 156.8 139 59.0
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.1e-36 156.8 242 39.3
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-36 156.4 231 40.7
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 3.5e-36 156.0 236 40.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 4.6e-36 155.6 204 46.1
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.7e-35 153.7 210 42.9
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.0e-35 152.9 228 41.7
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 3.9e-35 152.5 101 72.3
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.1e-33 146.7 202 41.1
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.8e-33 146.4 241 38.2
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 3.6e-33 146.0 208 39.9
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 4.7e-33 145.6 99 67.7
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.4e-32 144.1 228 39.0
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 3.1e-32 142.9 273 34.1
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 8.9e-32 141.4 226 37.2
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 1.2e-31 141.0 208 39.9
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.7e-30 137.1 98 66.3
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.7e-30 137.1 91 69.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.9e-30 136.3 228 34.2
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.2e-28 131.0 231 37.7
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 9.6e-26 121.3 215 37.7
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 4.0e-24 115.9 184 37.0
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.5e-23 114.0 81 64.2
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.7e-22 110.5 159 41.5
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 3.8e-22 109.4 68 75.0
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.5e-20 102.8 208 31.7
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.7e-19 100.5 231 29.9
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 3.0e-19 99.8 65 76.9
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 3.9e-19 99.4 191 33.5
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 7.3e-18 95.1 68 61.8
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 2.4e-16 90.1 67 58.2
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.2e-15 87.8 61 65.6
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 2.4e-13 80.1 92 46.7
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 8.7e-11 71.6 133 37.6
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 8.7e-11 71.6 91 46.2
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.9e-10 70.5 91 42.9
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.5e-10 70.1 95 43.2
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 3.3e-10 69.7 89 43.8
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.3e-10 69.3 93 44.1
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 9.6e-10 68.2 89 43.8
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 9.6e-10 68.2 91 45.1
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 9.6e-10 68.2 91 41.8
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.1e-08 64.7 148 30.4
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.4e-08 64.3 92 41.3
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 3.1e-08 63.2 90 41.1
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 6.9e-08 62.0 88 40.9
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 9.0e-08 61.6 91 35.2
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 9.0e-08 61.6 82 42.7
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.5e-07 59.3 81 43.2
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.0e-06 58.2 227 23.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.7e-06 57.4 65 52.3


User provided reference genes

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