Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.0e-52 208.0 117 100.0
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 2.7e-48 195.3 131 88.5
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.0e-39 166.8 117 87.2
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.0e-39 166.8 117 87.2
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 7.0e-33 144.1 116 78.4
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.6e-32 142.9 116 77.6
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 2.0e-27 125.9 117 70.1
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 9.8e-19 97.1 115 59.1
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 2.4e-17 92.4 116 56.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 5.4e-17 91.3 115 55.7
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 5.4e-17 91.3 116 54.3
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 2.1e-16 89.4 114 55.3
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 4.6e-16 88.2 116 53.4
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 4.6e-16 88.2 116 53.4
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 6.0e-16 87.8 116 53.4
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 6.0e-16 87.8 115 53.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.0e-15 87.0 116 52.6
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.3e-15 86.7 114 55.3
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 3.9e-15 85.1 117 52.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 3.9e-15 85.1 116 54.3
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 5.1e-15 84.7 119 52.9
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 5.1e-15 84.7 115 53.0
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 5.1e-15 84.7 107 55.1
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 8.6e-15 84.0 114 51.8
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.1e-14 83.6 116 50.9
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.1e-14 83.6 116 50.9
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.1e-14 83.6 116 50.9
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.1e-14 83.6 118 50.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.5e-14 83.2 117 51.3
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.9e-14 82.8 101 57.4
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 3.3e-14 82.0 112 50.0
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 3.3e-14 82.0 106 54.7
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.3e-14 82.0 102 56.9
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 4.3e-14 81.6 116 52.6
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 5.6e-14 81.3 117 52.1
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 7.3e-14 80.9 97 58.8
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.2e-13 80.1 112 52.7
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.6e-13 79.7 114 51.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.6e-13 79.7 92 62.0
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.6e-13 79.7 107 50.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 2.8e-13 79.0 94 58.5
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.8e-13 79.0 98 53.1
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 3.6e-13 78.6 101 52.5
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 4.7e-13 78.2 98 55.1
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 6.2e-13 77.8 97 55.7
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.2e-13 77.8 111 52.3
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 6.2e-13 77.8 111 52.3
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 6.2e-13 77.8 111 52.3
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 8.1e-13 77.4 97 55.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 8.1e-13 77.4 103 54.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.4e-12 76.6 114 49.1
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.4e-12 76.6 114 49.1
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.4e-12 76.6 96 56.2
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.8e-12 76.3 114 49.1
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.8e-12 76.3 111 51.4
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.8e-12 76.3 117 49.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.8e-12 76.3 111 55.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 2.3e-12 75.9 102 52.9
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.3e-12 75.9 105 54.3
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.1e-12 75.5 106 49.1
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 3.1e-12 75.5 113 51.3
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.1e-12 75.5 111 50.5
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 3.1e-12 75.5 97 53.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.0e-12 75.1 94 55.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 4.0e-12 75.1 97 54.6
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 4.0e-12 75.1 109 49.5
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 4.0e-12 75.1 117 47.9
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 5.2e-12 74.7 114 48.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 6.8e-12 74.3 114 50.0
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 8.9e-12 73.9 115 47.0
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 8.9e-12 73.9 102 52.9
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 8.9e-12 73.9 97 54.6
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 8.9e-12 73.9 105 53.3
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 8.9e-12 73.9 96 54.2
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 8.9e-12 73.9 115 50.4
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.2e-11 73.6 92 55.4
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.2e-11 73.6 103 49.5
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.2e-11 73.6 115 47.8
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.2e-11 73.6 113 46.0
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.2e-11 73.6 108 51.9
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.5e-11 73.2 110 47.3
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.0e-11 72.8 79 62.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 2.6e-11 72.4 89 53.9
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 3.4e-11 72.0 106 52.8
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.4e-11 72.0 116 45.7
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 3.4e-11 72.0 98 54.1
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.4e-11 72.0 108 50.0
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 4.4e-11 71.6 92 53.3
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 5.8e-11 71.2 90 54.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 5.8e-11 71.2 88 54.5
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.8e-11 71.2 87 55.2
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 9.9e-11 70.5 90 53.3
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.3e-10 70.1 108 50.0
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.7e-10 69.7 92 53.3
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 2.9e-10 68.9 90 53.3
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.9e-10 68.9 88 54.5
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 3.7e-10 68.6 90 52.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 4.9e-10 68.2 90 52.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 4.9e-10 68.2 111 49.5
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 6.4e-10 67.8 83 57.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 8.3e-10 67.4 114 48.2
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 8.3e-10 67.4 87 52.9
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.1e-09 67.0 90 51.1
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 1.1e-09 67.0 90 51.1
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.4e-09 66.6 73 60.3
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.9e-09 66.2 108 45.4
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.9e-09 66.2 100 48.0
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.9e-09 66.2 108 45.4
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.9e-09 66.2 116 47.4
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.9e-09 66.2 86 53.5
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.9e-09 66.2 95 49.5
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.9e-09 66.2 95 49.5
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.2e-09 65.5 109 44.0
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 4.1e-09 65.1 100 47.0
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 4.1e-09 65.1 100 48.0
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 4.1e-09 65.1 151 36.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 4.1e-09 65.1 111 48.6
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 5.4e-09 64.7 57 71.9
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 9.2e-09 63.9 88 53.4
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 1.2e-08 63.5 95 49.5
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.6e-08 63.2 106 48.1
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 2.1e-08 62.8 91 51.6
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 2.7e-08 62.4 94 50.0
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 6.0e-08 61.2 113 42.5
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 1.3e-07 60.1 97 49.5
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 3.0e-07 58.9 54 70.4
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 3.0e-07 58.9 71 56.3
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.6e-07 57.8 77 53.2
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 6.6e-07 57.8 54 66.7
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.1e-06 57.0 115 40.9
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 3.3e-06 55.5 82 46.3
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 7.3e-06 54.3 73 52.1


User provided reference genes

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