Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 0.0e+00 1244.2 613 100.0
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 5.1e-292 1007.3 566 88.7
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.3e-291 1004.6 566 87.5
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.3e-291 1004.6 566 87.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.0e-289 997.7 564 88.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-289 997.3 578 86.5
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.4e-288 994.6 564 87.9
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 5.8e-288 993.8 598 83.9
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 2.9e-287 991.5 564 88.1
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 2.9e-287 991.5 564 88.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.4e-287 989.9 565 87.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 4.6e-285 984.2 581 84.9
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 6.0e-285 983.8 565 87.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.0e-285 983.8 565 87.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 6.0e-285 983.8 565 87.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 6.0e-285 983.8 565 87.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 6.7e-284 980.3 561 87.3
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 4.3e-283 977.6 607 81.9
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.1e-282 973.4 566 85.9
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.0e-281 971.1 566 85.5
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.0e-279 966.5 564 85.8
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.5e-278 960.7 543 88.0
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.0e-276 954.9 558 86.6
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.7e-276 953.4 568 84.7
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.7e-276 953.4 568 84.7
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.1e-275 953.0 567 85.7
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.8e-271 937.9 566 83.7
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.2e-270 934.9 532 87.0
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 4.2e-270 934.5 550 85.5
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.5e-269 931.4 549 84.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.3e-260 902.1 567 80.6
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 7.7e-256 887.1 562 82.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 7.7e-256 887.1 562 82.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 7.7e-256 887.1 562 82.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 7.7e-256 887.1 562 82.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 7.7e-256 887.1 562 82.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 7.7e-256 887.1 562 82.2
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 3.3e-251 871.7 552 80.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.1e-245 850.9 564 78.4
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.9e-244 848.2 496 85.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 4.4e-243 844.7 565 76.8
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.2e-238 828.6 562 77.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.1e-233 813.5 474 86.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 5.2e-196 688.3 383 89.3
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.4e-193 679.5 479 75.8
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.3e-191 673.7 383 88.0
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.0e-187 659.8 373 87.7
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.4e-187 659.1 371 88.4
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.4e-187 659.1 371 88.4
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.7e-186 656.8 370 87.8
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-186 656.8 465 75.3
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.7e-186 656.8 399 83.2
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.8e-186 655.6 370 87.6
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.4e-178 628.2 360 86.9
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 8.4e-170 601.3 458 69.4
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.3e-169 597.8 562 59.4
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.1e-166 590.9 318 90.6
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-165 587.4 389 78.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.7e-165 585.9 387 78.3
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 2.0e-163 580.1 318 89.9
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-162 577.0 399 75.7
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.9e-158 563.5 372 78.8
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.3e-153 544.7 567 55.9
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 7.2e-145 518.5 294 89.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 7.7e-139 498.4 553 52.6
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.0e-138 495.7 553 52.4
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 9.4e-137 491.5 306 81.4
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 5.0e-130 469.2 292 81.5
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 9.4e-129 464.9 369 68.0
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 4.7e-128 462.6 260 88.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.4e-126 456.1 286 81.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-123 448.0 248 87.5
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 7.7e-123 445.3 271 82.7
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-118 429.9 286 76.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.0e-114 418.3 243 86.0
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-113 414.1 276 77.9
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 2.7e-112 410.2 239 86.6
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 1.6e-107 394.4 383 58.2
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-105 387.5 275 74.9
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-105 387.5 275 74.9
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 8.0e-104 382.1 250 76.4
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 6.4e-101 372.5 234 79.1
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.0e-99 367.5 854 36.1
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 4.3e-97 359.8 209 86.1
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 9.5e-97 358.6 266 69.5
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 7.5e-94 349.0 195 88.2
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-91 341.7 191 88.0
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-91 341.7 191 88.0
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 4.6e-91 339.7 191 87.4
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 7.8e-91 339.0 198 86.9
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 3.3e-89 333.6 190 88.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 4.7e-88 329.7 184 88.0
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.0e-87 326.6 184 87.5
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 5.2e-87 326.2 181 90.6
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 2.6e-86 323.9 172 90.7
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-85 321.6 193 81.9
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-85 321.6 193 81.9
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.3e-85 321.6 287 62.7
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 3.2e-84 317.0 176 87.5
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.5e-83 313.5 263 63.9
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 5.6e-81 306.2 176 85.2
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 4.7e-80 303.1 263 63.1
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 5.2e-79 299.7 175 83.4
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.2e-78 298.5 263 61.6
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-73 282.0 265 59.2
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.3e-73 279.3 218 70.6
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 9.6e-73 278.9 144 91.7
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 8.1e-72 275.8 171 82.5
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.1e-71 273.9 227 66.1
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.1e-68 265.4 163 82.2
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.2e-68 263.5 160 84.4
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-65 255.0 172 75.6
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-65 255.0 172 75.6
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 7.3e-65 252.7 136 91.9
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.1e-64 249.2 148 83.8
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 7.6e-62 242.7 249 51.8
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 5.1e-58 229.9 142 76.8
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-57 228.8 122 91.8
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-57 228.4 119 88.2
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 7.4e-57 226.1 119 91.6
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.1e-56 224.6 265 50.6
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 6.2e-56 223.0 123 88.6
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 9.9e-54 215.7 112 91.1
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 3.8e-53 213.8 147 71.4
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 6.4e-53 213.0 119 84.0
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.6e-51 206.8 123 85.4
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.0e-50 204.1 125 81.6
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 5.1e-50 203.4 116 87.9
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.5e-49 201.1 129 79.1
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 1.6e-48 198.4 106 93.4
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.8e-47 194.9 111 89.2
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 2.9e-45 187.6 122 80.3
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.5e-44 184.5 123 78.0
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.7e-43 181.0 123 80.5
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.7e-41 173.3 330 39.7
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 6.3e-40 169.9 105 82.9
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.1e-39 167.5 121 75.2
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-37 162.2 91 87.9
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 5.0e-37 160.2 102 77.5
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.2e-36 157.1 94 85.1
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 3.6e-35 154.1 91 85.7
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 5.1e-34 150.2 75 96.0
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 4.1e-31 140.6 77 83.1
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 4.2e-28 130.6 66 93.9
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 1.2e-27 129.0 164 48.2
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 7.9e-27 126.3 142 50.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 2.3e-26 124.8 65 92.3
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 3.0e-26 124.4 93 71.0
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-22 112.5 61 88.5
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 3.8e-21 107.5 77 67.5
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.2e-20 103.2 73 74.0
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.4e-20 102.8 64 71.9
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.9e-19 99.8 164 40.9
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.8e-18 98.6 71 67.6
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 3.0e-18 97.8 71 70.4
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 5.2e-18 97.1 70 71.4
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 3.7e-16 90.9 70 68.6
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 2.4e-15 88.2 48 75.0
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 7.0e-15 86.7 49 85.7
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-14 85.5 84 52.4
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 4.5e-14 84.0 62 66.1
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 1.3e-13 82.4 48 83.3
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.1e-12 79.3 67 61.2
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-11 73.9 115 42.6
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 6.1e-11 73.6 62 61.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-10 72.4 47 72.3
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 5.2e-10 70.5 65 58.5
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.5e-09 68.9 54 68.5
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.3e-09 67.8 48 68.8
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 4.4e-09 67.4 53 62.3
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.7e-09 67.0 50 66.0
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 1.7e-08 65.5 42 81.0
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-08 64.7 146 34.9
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 8.2e-08 63.2 28 96.4
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.4e-07 62.4 47 72.3
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 3.1e-07 61.2 83 41.0
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 1.6e-06 58.9 54 50.0
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 5.9e-06 57.0 34 82.4
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.9e-06 57.0 37 70.3


User provided reference genes

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