Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG209450 Cucumis sativus L. HOM05D010604 ORTHO05D012476 3.4e-103 378.3 181 100.0
arahy.Tifrunner.gnm1.ann1.05XESX Arachis hypogaea HOM05D010604 ORTHO05D012476 4.6e-92 341.3 167 97.6
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 1.1e-90 336.7 167 96.4
Lsat_1_v5_gn_5_152921 Lactuca sativa HOM05D010604 ORTHO05D012476 9.7e-90 333.6 167 95.8
VMungo0329G0006 Vigna mungo HOM05D010604 ORTHO05D012476 3.7e-89 331.6 175 93.1
arahy.Tifrunner.gnm1.ann1.0LX666 Arachis hypogaea HOM05D010604 ORTHO05D012476 2.6e-71 272.3 159 84.9
RhsimMtG0000800 Rhododendron simsii HOM05D010604 ORTHO05D012476 1.8e-64 249.6 118 98.3
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 5.9e-47 191.4 175 61.1
Potri.007G062061 Populus trichocarpa HOM05D010604 ORTHO05D012476 2.3e-46 189.5 88 98.9
Sopen09g020260 Solanum pennellii HOM05D010604 ORTHO05D012476 8.6e-38 161.0 85 89.4
Solyc09g056100.2 Solanum lycopersicum HOM05D010604 ORTHO05D012476 1.9e-29 133.3 82 75.6
SHI37160 Sapria himalayana HOM05D010604 ORTHO05D012476 3.6e-28 129.0 69 87.0
Lsat_1_v5_gn_5_118280 Lactuca sativa HOM05D001030 ORTHO05D003090 1.1e-24 117.5 65 83.1
Nitab4.5_0005831g0060 Nicotiana tabacum HOM05D010604 ORTHO05D012476 7.8e-23 111.3 87 64.4
Hma1.2p1_0159F.1_g070500 Hydrangea macrophylla HOM05D010604 ORTHO05D012476 5.1e-22 108.6 59 84.7
Nitab4.5_0001291g0050 Nicotiana tabacum HOM05D009475 ORTHO05D012476 2.6e-18 96.3 51 88.2
SEGI_13287 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 3.4e-18 95.9 105 52.4
SEGI_10061 Sequoiadendron giganteum HOM05D000963 ORTHO05D005131 1.7e-17 93.6 105 51.4
VMungo1024G0002 Vigna mungo HOM05D000963 ORTHO05D005131 7.8e-15 84.7 55 72.7
MELO3C026409.2 Cucumis melo HOM05D010604 ORTHO05D012476 3.9e-14 82.4 73 60.3
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 2.5e-13 79.7 55 72.7
SalBow6G4874 Salvia bowleyana HOM05D000963 ORTHO05D005131 2.8e-12 76.3 55 70.9
Nitab4.5_0000017g0110 Nicotiana tabacum HOM05D000963 ORTHO05D005131 6.8e-11 71.6 49 69.4
Gohir.D04G090233 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-10 70.5 55 67.3
Gohir.D10G125850 Gossypium hirsutum HOM05D000963 ORTHO05D005131 1.5e-10 70.5 55 65.5
Migut.D01379 Erythranthe guttata HOM05D000963 ORTHO05D005131 2.0e-10 70.1 49 71.4
Sc25g0002000 Simmondsia chinensis HOM05D000963 ORTHO05D005131 2.0e-10 70.1 49 71.4
BcaNung01517 Brassica carinata HOM05D000963 ORTHO05D005131 2.6e-10 69.7 56 64.3
Gohir.A09G101420 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.4e-10 69.3 49 69.4
Hund25913 Selenicereus undatus HOM05D000963 ORTHO05D005131 3.4e-10 69.3 48 70.8
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 4.4e-10 68.9 53 66.0
DCAR_001146 Daucus carota HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
DCAR_001525 Daucus carota HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 5.8e-10 68.6 48 70.8
DCAR_032037 Daucus carota HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 5.8e-10 68.6 48 70.8
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 5.8e-10 68.6 48 70.8
ECA169G0003 Erigeron canadensis HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
Gohir.D03G074448 Gossypium hirsutum HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
PGSC0003DMG400018892 Solanum tuberosum HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
PGSC0003DMG400036067 Solanum tuberosum HOM05D000963 ORTHO05D001540 5.8e-10 68.6 48 70.8
TAR365G0238 Trochodendron aralioides HOM05D001325 ORTHO05D001540 5.8e-10 68.6 48 70.8
unitig_87.g27920 Utricularia gibba HOM05D000963 ORTHO05D001540 5.8e-10 68.6 48 70.8
unitig_87.g28036 Utricularia gibba HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
unitig_91.g26518 Utricularia gibba HOM05D001325 ORTHO05D001540 5.8e-10 68.6 48 70.8
unitig_91.g26528 Utricularia gibba HOM05D000963 ORTHO05D005131 5.8e-10 68.6 48 70.8
Sc05g0004130 Simmondsia chinensis HOM05D000963 ORTHO05D005131 7.6e-10 68.2 49 69.4
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 9.9e-10 67.8 49 71.4
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 1.3e-09 67.4 90 46.7
SGA_v2.0_scaffold893G53701 Striga asiatica HOM05D000963 ORTHO05D005131 1.3e-09 67.4 48 68.8
Gorai.012G100900 Gossypium raimondii HOM05D000963 ORTHO05D005131 1.7e-09 67.0 55 63.6
Gohir.A12G053150 Gossypium hirsutum HOM05D000963 ORTHO05D005131 2.2e-09 66.6 53 64.2
MBI13_g30267_MAGBIO Magnolia biondii HOM05D000571 ORTHO05D000435 2.9e-09 66.2 50 66.0
RhsimPtG0005500 Rhododendron simsii HOM05D000963 ORTHO05D005131 2.9e-09 66.2 48 70.8
PGSC0003DMG400020295 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.9e-09 66.2 48 68.8
Gohir.A13G086560 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.8e-09 65.9 57 59.6
Oeu039801.1 Olea europaea HOM05D000963 ORTHO05D005131 3.8e-09 65.9 48 68.8
Gohir.A01G056250 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.9e-09 65.5 55 60.0
Gohir.A12G092444 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.9e-09 65.5 48 64.6
vmacro22396 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 6.4e-09 65.1 48 68.8
vmacro22416 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 6.4e-09 65.1 48 68.8
vmacro22421 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 6.4e-09 65.1 48 68.8
Sc03g0007080 Simmondsia chinensis HOM05D000963 ORTHO05D005131 8.4e-09 64.7 48 68.8
Sc05g0004060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 8.4e-09 64.7 53 62.3
Sc14g0005060 Simmondsia chinensis HOM05D000963 ORTHO05D005131 1.1e-08 64.3 55 63.6
unitig_8.g4106 Utricularia gibba HOM05D000963 ORTHO05D005131 1.1e-08 64.3 48 68.8
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 1.9e-08 63.5 48 66.7
SHI36631 Sapria himalayana HOM05D010604 ORTHO05D012476 1.9e-08 63.5 71 50.7
Sopen11g020190 Solanum pennellii HOM05D000963 ORTHO05D005131 2.4e-08 63.2 64 54.7
SHI47131 Sapria himalayana HOM05D000963 ORTHO05D005131 3.2e-08 62.8 48 64.6
Cpa.g.sc389.2 Carica papaya HOM05D000963 ORTHO05D005131 7.1e-08 61.6 49 63.3
SHI35939 Sapria himalayana HOM05D010604 ORTHO05D012476 7.1e-08 61.6 36 77.8
SHI37614 Sapria himalayana HOM05D000963 ORTHO05D005131 7.1e-08 61.6 48 64.6
vmacro09305 Vaccinium macrocarpon HOM05D000963 ORTHO05D005131 7.1e-08 61.6 102 37.3
Oeu015125.1 Olea europaea HOM05D000963 ORTHO05D010201 3.5e-07 59.3 48 62.5
Gorai.005G078000 Gossypium raimondii HOM05D000963 ORTHO05D005131 6.0e-07 58.5 55 54.5
SHI42531 Sapria himalayana HOM05D000963 ORTHO05D005131 6.0e-07 58.5 48 60.4
Sc05g0002290 Simmondsia chinensis HOM05D000963 ORTHO05D005131 7.8e-07 58.2 48 62.5
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 2.3e-06 56.6 35 77.1
PGSC0003DMG400046976 Solanum tuberosum HOM05D000963 ORTHO05D005131 2.3e-06 56.6 47 57.4
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 3.0e-06 56.2 89 43.8
PGSC0003DMG400001215 Solanum tuberosum HOM05D000963 ORTHO05D005131 3.0e-06 56.2 53 58.5
Sopen02g009100 Solanum pennellii HOM05D000963 ORTHO05D005131 3.9e-06 55.8 38 65.8
SHI36398 Sapria himalayana HOM05D000963 ORTHO05D005131 5.1e-06 55.5 48 60.4
TAR633G0621 Trochodendron aralioides HOM05D000963 ORTHO05D005131 6.6e-06 55.1 35 71.4


User provided reference genes

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