Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG209220 Cucumis sativus L. HOM05D002965 ORTHO05D010183 1.8e-87 325.9 160 100.0
QL05p039661 Quercus lobata HOM05D002965 ORTHO05D010183 2.9e-69 265.4 137 95.6
LjContig00315g0010995 Lotus japonicus HOM05D002965 ORTHO05D010183 1.6e-67 259.6 133 97.0
Medtr0082s0280 Medicago truncatula HOM05D002965 ORTHO05D010183 1.5e-65 253.1 128 98.4
CAN.G309.4 Capsicum annuum HOM05D002965 ORTHO05D010183 2.5e-65 252.3 133 94.7
Cpa.g.sc263.23 Carica papaya HOM05D002965 ORTHO05D010183 5.6e-65 251.1 133 94.7
Hma1.2p1_1338F.1_g276549 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 7.3e-65 250.8 128 97.7
Hma1.2p1_1338F.1_g276560 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 7.3e-65 250.8 128 97.7
arahy.Tifrunner.gnm1.ann1.CG3D8R Arachis hypogaea HOM05D002965 ORTHO05D010183 1.1e-63 246.9 137 92.7
arahy.Tifrunner.gnm1.ann1.EP7E6M Arachis hypogaea HOM05D002965 ORTHO05D010183 1.1e-63 246.9 137 92.7
arahy.Tifrunner.gnm1.ann1.I1QAK6 Arachis hypogaea HOM05D002965 ORTHO05D010183 5.2e-63 244.6 133 93.2
Sed0028066 Sechium edule HOM05D002965 ORTHO05D010183 6.8e-63 244.2 134 90.3
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 8.9e-63 243.8 128 95.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 1.2e-62 243.4 124 97.6
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 1.5e-62 243.0 128 93.8
Dinv06704 Davidia involucrata HOM05D002965 ORTHO05D010183 2.6e-62 242.3 122 97.5
SalBow1G8555 Salvia bowleyana HOM05D002965 ORTHO05D010183 2.6e-62 242.3 133 91.7
Nitab4.5_0005831g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.3e-58 229.9 137 86.1
Actinidia10888 Actinidia chinensis HOM05D002965 ORTHO05D010183 3.0e-58 228.8 132 88.6
Nitab4.5_0005613g0040 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.6e-56 223.0 124 88.7
Sp3g25630 Schrenkiella parvula HOM05D002965 ORTHO05D010183 5.2e-55 218.0 133 85.0
SGA_v2.0_scaffold479G52282 Striga asiatica HOM05D002965 ORTHO05D010183 2.3e-50 202.6 123 82.9
TPR.G40481 Trifolium pratense HOM05D002965 ORTHO05D010183 3.9e-50 201.8 101 99.0
Nitab4.5_0000172g1470 Nicotiana tabacum HOM05D002965 ORTHO05D010183 1.8e-47 193.0 119 82.4
unitig_87.g27935 Utricularia gibba HOM05D002965 ORTHO05D010183 2.6e-46 189.1 99 93.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 4.2e-44 181.8 117 82.1
Hma1.2p1_0204F.1_g086870 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 8.7e-42 174.1 101 86.1
Nitab4.5_0001761g0080 Nicotiana tabacum HOM05D002965 ORTHO05D010183 7.3e-41 171.0 86 96.5
Hma1.2p1_0000F.1_g000060 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 2.8e-40 169.1 96 87.5
RcHm_v2.0_MTg0499241 Rosa chinensis HOM05D002965 ORTHO05D010183 4.0e-39 165.2 82 100.0
Potri.007G061981 Populus trichocarpa HOM05D002965 ORTHO05D010183 9.0e-39 164.1 83 98.8
Medtr5g040110 Medicago truncatula HOM05D002965 ORTHO05D010183 3.4e-38 162.2 82 98.8
Psat6g191080 Pisum sativum HOM05D002965 ORTHO05D010183 3.4e-38 162.2 87 88.5
HanXRQChr08g0212281 Helianthus annuus HOM05D002965 ORTHO05D010183 9.9e-38 160.6 87 92.0
HanXRQMTg0579441 Helianthus annuus HOM05D002965 ORTHO05D010183 9.9e-38 160.6 87 92.0
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 8.4e-37 157.5 96 83.3
Lsat_1_v5_gn_4_66041 Lactuca sativa HOM05D002965 ORTHO05D010183 1.4e-36 156.8 82 96.3
Aqoxy1G02687 Aquilegia oxysepala HOM05D002965 ORTHO05D010183 5.4e-36 154.8 82 95.1
MELO3C031425.2 Cucumis melo HOM05D002965 ORTHO05D010183 1.6e-35 153.3 90 84.4
CAN.G1576.4 Capsicum annuum HOM05D002965 ORTHO05D010183 1.7e-34 149.8 96 81.2
SHI48910 Sapria himalayana HOM05D002965 ORTHO05D010183 6.6e-34 147.9 78 93.6
CDE02G3239 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 3.1e-31 139.0 88 80.7
Sopen05g007970 Solanum pennellii HOM05D002965 ORTHO05D010183 2.9e-29 132.5 65 96.9
BNapus_Darmor_BZH_scaffold_234p00020 Brassica napus HOM05D002965 ORTHO05D010183 4.9e-29 131.7 70 92.9
BolSC28t60382H Brassica oleracea HOM05D002965 ORTHO05D010183 4.9e-29 131.7 70 92.9
BolSC28t60415H Brassica oleracea HOM05D002965 ORTHO05D010183 4.9e-29 131.7 70 92.9
BraSC177t45752Z Brassica rapa HOM05D002965 ORTHO05D010183 4.9e-29 131.7 70 92.9
Peaxi162Scf00197g00037 Petunia axillaris HOM05D002965 ORTHO05D010183 1.4e-28 130.2 90 77.8
Solyc10g018950.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 1.9e-28 129.8 92 71.7
ATMG01120 Arabidopsis thaliana HOM05D002965 ORTHO05D010183 2.4e-28 129.4 64 98.4
Hma1.2p1_0713F.1_g207720 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.2e-27 127.1 68 95.6
Nitab4.5_0002418g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 2.7e-27 125.9 66 89.4
Solyc00g118690.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 1.8e-26 123.2 63 98.4
BraSC48t46251Z Brassica rapa HOM05D002965 ORTHO05D010183 8.7e-26 120.9 64 95.3
CAN.G390.19 Capsicum annuum HOM05D002965 ORTHO05D010183 1.9e-25 119.8 72 87.5
CAN.G285.11 Capsicum annuum HOM05D002965 ORTHO05D010183 2.8e-24 115.9 62 91.9
Lalb_Chr00c21g0405781 Lupinus albus HOM05D002965 ORTHO05D010183 6.2e-24 114.8 56 100.0
VMungo0647G1384 Vigna mungo HOM05D002965 ORTHO05D010183 6.2e-24 114.8 57 98.2
CAN.G1061.19 Capsicum annuum HOM05D002965 ORTHO05D010183 1.4e-23 113.6 57 98.2
RhsimMtG0001000 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.4e-23 113.6 57 98.2
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 3.1e-23 112.5 86 72.1
Nitab4.5_0001796g0410 Nicotiana tabacum HOM05D002965 ORTHO05D010183 5.3e-23 111.7 56 96.4
CSS0026545 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D010183 9.0e-23 110.9 102 63.7
ECA039G0012 Erigeron canadensis HOM05D002965 ORTHO05D010183 1.7e-21 106.7 55 96.4
Cfa022987 Carpinus fangiana HOM05D002965 ORTHO05D010183 2.9e-21 105.9 53 98.1
CDE02G2102 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 8.4e-21 104.4 119 54.6
Nitab4.5_0002558g0140 Nicotiana tabacum HOM05D002965 ORTHO05D010183 7.1e-20 101.3 56 89.3
SMO053G0011 Selaginella moellendorffii HOM05D002965 ORTHO05D010183 3.5e-19 99.0 68 67.6
Nitab4.5_0000859g0160 Nicotiana tabacum HOM05D002965 ORTHO05D010183 8.7e-18 94.4 80 62.5
Mapoly0013s0013 Marchantia polymorpha HOM05D002965 ORTHO05D010183 8.2e-16 87.8 65 63.1
SHI29064 Sapria himalayana HOM05D002965 ORTHO05D010183 5.5e-12 75.1 63 61.9
Dinv34203 Davidia involucrata HOM05D002965 ORTHO05D010183 1.8e-10 70.1 40 85.0
SHI41349 Sapria himalayana HOM05D037518 ORTHO05D010183 2.3e-10 69.7 36 91.7
BolC7t41501H Brassica oleracea HOM05D002965 ORTHO05D010183 5.1e-10 68.6 36 88.9
Nitab4.5_0000580g0190 Nicotiana tabacum HOM05D002965 ORTHO05D011068 1.1e-07 60.8 33 84.8
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.1e-07 60.8 38 78.9


User provided reference genes

Program Settings