Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG208550 Cucumis sativus L. HOM05D000533 ORTHO05D001069 2.7e-241 838.2 411 100.0
MELO3C027715.2 Cucumis melo HOM05D000743 ORTHO05D011137 3.0e-54 216.9 147 69.4
Peaxi162Scf00197g00026 Petunia axillaris HOM05D000533 ORTHO05D001069 3.9e-30 136.7 139 56.8
Solyc00g500185.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.9e-30 136.7 139 56.8
MSTRG.26041 Avicennia marina HOM05D000533 ORTHO05D001069 2.5e-29 134.0 124 60.5
CAN.G1632.17 Capsicum annuum HOM05D000533 ORTHO05D001069 2.5e-29 134.0 124 60.5
Peaxi162Scf03098g00003 Petunia axillaris HOM05D000533 ORTHO05D001069 2.5e-29 134.0 124 60.5
CAN.G950.4 Capsicum annuum HOM05D009131 ORTHO05D011137 7.4e-29 132.5 146 50.0
Lj2A1229G104 Lonicera japonica HOM05D000533 ORTHO05D001069 7.4e-29 132.5 124 59.7
CAN.G4.19 Capsicum annuum HOM05D000533 ORTHO05D001069 9.7e-29 132.1 124 59.7
Oeu013777.2 Olea europaea HOM05D000533 ORTHO05D001069 1.3e-28 131.7 124 59.7
Aqoxy4G01612 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 3.7e-28 130.2 124 58.9
Sed0022170 Sechium edule HOM05D000533 ORTHO05D001069 1.1e-27 128.6 123 59.3
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.4e-27 128.3 124 58.9
Nitab4.5_0002287g0110 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.5e-26 124.8 121 59.5
Solyc01g065810.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.5e-26 124.8 124 55.6
BolSC28t60388H Brassica oleracea HOM05D009131 ORTHO05D011137 3.4e-26 123.6 179 44.7
Nitab4.5_0000127g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 7.7e-26 122.5 124 57.3
Nitab4.5_0000172g0890 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-24 118.6 101 64.4
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.4e-24 118.2 153 45.1
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 1.9e-24 117.9 153 45.1
SGA_v2.0_scaffold477G52170 Striga asiatica HOM05D009131 ORTHO05D011137 2.5e-24 117.5 171 40.4
GSVIVG01004958001 Vitis vinifera HOM05D000533 ORTHO05D001069 2.5e-24 117.5 116 58.6
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 9.4e-24 115.5 152 44.7
Peaxi162Scf00864g00009 Petunia axillaris HOM05D000533 ORTHO05D001069 9.4e-24 115.5 135 51.9
CARHR287230 Cardamine hirsuta HOM05D009131 ORTHO05D011137 3.6e-23 113.6 162 42.0
Nitab4.5_0002418g0130 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.1e-22 109.8 121 52.1
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 8.8e-22 109.0 236 31.4
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 8.8e-22 109.0 236 31.4
CAN.G811.5 Capsicum annuum HOM05D000533 ORTHO05D001069 8.8e-22 109.0 127 55.1
HanXRQMTg0579581 Helianthus annuus HOM05D000533 ORTHO05D001069 8.8e-22 109.0 105 59.0
LjContig00315g0008577 Lotus japonicus HOM05D000533 ORTHO05D001069 4.4e-21 106.7 103 59.2
Sed0003286 Sechium edule HOM05D000533 ORTHO05D001069 9.7e-21 105.5 104 58.7
Sed0012936 Sechium edule HOM05D000533 ORTHO05D001069 9.7e-21 105.5 104 58.7
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.3e-20 105.1 179 34.1
Lsat_1_v5_gn_1_2620 Lactuca sativa HOM05D009131 ORTHO05D011137 2.2e-20 104.4 172 36.0
Lsat_1_v5_gn_7_25441 Lactuca sativa HOM05D009131 ORTHO05D011137 2.2e-20 104.4 172 36.0
SalBow1G6484 Salvia bowleyana HOM05D000533 ORTHO05D001069 2.2e-20 104.4 105 57.1
arahy.Tifrunner.gnm1.ann1.1S94M9 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.7e-20 103.6 63 81.0
arahy.Tifrunner.gnm1.ann1.C1VVMY Arachis hypogaea HOM05D000533 ORTHO05D001069 3.7e-20 103.6 63 81.0
arahy.Tifrunner.gnm1.ann1.PQN9HV Arachis hypogaea HOM05D000533 ORTHO05D001069 3.7e-20 103.6 63 81.0
arahy.Tifrunner.gnm1.ann1.WRNL5Y Arachis hypogaea HOM05D000533 ORTHO05D001069 3.7e-20 103.6 63 81.0
AUR62043914 Chenopodium quinoa HOM05D000533 ORTHO05D001069 8.2e-20 102.4 51 96.1
Nitab4.5_0008916g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.1e-19 102.1 129 48.1
Cpa.g.sc200.35 Carica papaya HOM05D000533 ORTHO05D001069 1.8e-19 101.3 91 64.8
Ah.10g028350 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.4e-19 100.9 51 96.1
Aqoxy3G01139 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
arahy.Tifrunner.gnm1.ann1.0LI3ZC Arachis hypogaea HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
arahy.Tifrunner.gnm1.ann1.VAXL0Q Arachis hypogaea HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
arahy.Tifrunner.gnm1.ann1.WT8VJC Arachis hypogaea HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
Cfa023036 Carpinus fangiana HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
DCAR_032449 Daucus carota HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
HanXRQChr04g0109061 Helianthus annuus HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
HanXRQChr14g0434361 Helianthus annuus HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
Lsat_1_v5_gn_4_123980 Lactuca sativa HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
Lsat_1_v5_gn_5_152661 Lactuca sativa HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
Lsat_1_v5_gn_7_25900 Lactuca sativa HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
Lalb_Chr00c24g0407281 Lupinus albus HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
GSVIVG01006220001 Vitis vinifera HOM05D000533 ORTHO05D001069 4.1e-19 100.1 48 100.0
Aqoxy7G01636 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 9.1e-19 99.0 48 97.9
Glyma.15G187666 Glycine max HOM05D000533 ORTHO05D001069 9.1e-19 99.0 48 97.9
BraSC48t46291Z Brassica rapa HOM05D000533 ORTHO05D001069 1.2e-18 98.6 113 52.2
LjContig00315g0007090 Lotus japonicus HOM05D009131 ORTHO05D011137 1.2e-18 98.6 179 34.6
LjContig00439g0010199 Lotus japonicus HOM05D009131 ORTHO05D011137 1.2e-18 98.6 179 34.6
Solyc00g500099.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 1.2e-18 98.6 136 41.9
Solyc00g500272.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 1.2e-18 98.6 136 41.9
Solyc00g500318.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 1.2e-18 98.6 136 41.9
Solyc00g500361.1 Solanum lycopersicum HOM05D001325 ORTHO05D011137 1.2e-18 98.6 136 41.9
RhsimMtG0002000 Rhododendron simsii HOM05D000533 ORTHO05D001069 1.6e-18 98.2 50 94.0
Aa31csc1081G30 Aethionema arabicum HOM05D000533 ORTHO05D001069 2.0e-18 97.8 48 97.9
ATMG00510 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 2.0e-18 97.8 48 97.9
CAN.G267.14 Capsicum annuum HOM05D000533 ORTHO05D001069 2.0e-18 97.8 48 97.9
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.0e-18 97.8 189 32.8
Lsat_1_v5_gn_7_99760 Lactuca sativa HOM05D000533 ORTHO05D001069 2.0e-18 97.8 48 97.9
Sopen05g012880 Solanum pennellii HOM05D000533 ORTHO05D001069 2.0e-18 97.8 48 97.9
unitig_87.g27982 Utricularia gibba HOM05D000533 ORTHO05D001069 2.0e-18 97.8 48 97.9
Glyma.15G188000 Glycine max HOM05D000533 ORTHO05D001069 3.5e-18 97.1 48 95.8
Solyc00g500116.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 3.5e-18 97.1 136 41.9
Ah.03g144220 Amaranthus hybridus HOM05D009131 ORTHO05D011137 7.7e-18 95.9 123 39.0
BraSC48t46305Z Brassica rapa HOM05D000533 ORTHO05D001069 1.0e-17 95.5 48 95.8
Lsat_1_v5_gn_5_16060 Lactuca sativa HOM05D000533 ORTHO05D001069 1.0e-17 95.5 48 93.8
PGSC0003DMG400034591 Solanum tuberosum HOM05D009131 ORTHO05D011137 2.9e-17 94.0 140 40.0
PGSC0003DMG402008771 Solanum tuberosum HOM05D009131 ORTHO05D011137 2.9e-17 94.0 140 40.0
SHI29300 Sapria himalayana HOM05D000533 ORTHO05D001069 6.5e-17 92.8 48 89.6
BolC1t03435H Brassica oleracea HOM05D000533 ORTHO05D001069 1.1e-16 92.0 48 91.7
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-16 92.0 88 61.4
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.1e-16 92.0 88 61.4
SEGI_08012 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.5e-16 91.7 48 91.7
Sopen05g012870 Solanum pennellii HOM05D000533 ORTHO05D001069 1.5e-16 91.7 48 93.8
Nitab4.5_0008578g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.5e-16 90.9 48 89.6
SHI52562 Sapria himalayana HOM05D000533 ORTHO05D001069 7.2e-16 89.4 48 91.7
Nitab4.5_0012067g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.7e-15 87.4 116 49.1
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 3.6e-15 87.0 41 100.0
PGR028G0024 Punica granatum HOM05D009131 ORTHO05D011137 4.7e-15 86.7 125 40.8
PGR069G0015 Punica granatum HOM05D009131 ORTHO05D011137 4.7e-15 86.7 125 40.8
PGR069G0016 Punica granatum HOM05D009131 ORTHO05D011137 4.7e-15 86.7 125 40.8
PGR071G0006 Punica granatum HOM05D004537 ORTHO05D005492 4.7e-15 86.7 125 40.8
FvH4_2g05080 Fragaria vesca HOM05D000533 ORTHO05D001069 6.1e-15 86.3 48 89.6
FvH4_c1g00130 Fragaria vesca HOM05D000533 ORTHO05D001069 6.1e-15 86.3 48 89.6
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 6.1e-15 86.3 48 89.6
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 6.1e-15 86.3 48 89.6
Nitab4.5_0001153g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 8.0e-15 85.9 47 87.2
Solyc12g036590.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.0e-14 85.5 48 85.4
arahy.Tifrunner.gnm1.ann1.VVPQ8E Arachis hypogaea HOM05D000533 ORTHO05D001069 1.4e-14 85.1 40 100.0
A04p09580 Brassica napus HOM05D000533 ORTHO05D001069 1.4e-14 85.1 95 52.6
BolSC28t60324H Brassica oleracea HOM05D000533 ORTHO05D001069 1.4e-14 85.1 95 52.6
BolSC28t60426H Brassica oleracea HOM05D000533 ORTHO05D001069 1.4e-14 85.1 95 52.6
Cpa.g.sc263.15 Carica papaya HOM05D000533 ORTHO05D001069 1.4e-14 85.1 40 100.0
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 1.8e-14 84.7 44 88.6
Ca_26708_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 1.8e-14 84.7 44 88.6
Lsat_1_v5_gn_5_16481 Lactuca sativa HOM05D009131 ORTHO05D011137 3.0e-14 84.0 147 34.0
Sp3g25560 Schrenkiella parvula HOM05D000533 ORTHO05D001069 5.2e-14 83.2 85 60.0
SMO053G0001 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 5.2e-14 83.2 54 79.6
A04p09520 Brassica napus HOM05D009131 ORTHO05D011137 6.7e-14 82.8 120 45.8
Lj2P1230T116 Lonicera japonica HOM05D009131 ORTHO05D011137 6.7e-14 82.8 135 37.0
SHI25676 Sapria himalayana HOM05D000533 ORTHO05D001069 6.7e-14 82.8 81 55.6
AUR62026824 Chenopodium quinoa HOM05D000533 ORTHO05D001069 8.8e-14 82.4 42 92.9
SabraMtG0006500 Salix brachista HOM05D000533 ORTHO05D001069 8.8e-14 82.4 39 100.0
C01p34650 Brassica napus HOM05D000533 ORTHO05D001069 1.1e-13 82.0 95 51.6
ClCG08G009690 Citrullus lanatus HOM05D000533 ORTHO05D001069 2.6e-13 80.9 38 100.0
Mapoly0011s0058 Marchantia polymorpha HOM05D000533 ORTHO05D001069 4.4e-13 80.1 48 81.2
Nitab4.5_0001649g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.4e-13 80.1 49 79.6
HanXRQMTg0579611 Helianthus annuus HOM05D009131 ORTHO05D011137 9.7e-13 79.0 158 34.8
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 2.2e-12 77.8 38 97.4
Solyc00g500170.1 Solanum lycopersicum HOM05D009131 ORTHO05D011137 2.2e-12 77.8 128 37.5
AagrBONN_evm.TU.Sc2ySwM_117.4105 Anthoceros agrestis HOM05D000533 ORTHO05D001069 4.8e-12 76.6 48 79.2
CAN.G1.13 Capsicum annuum HOM05D000533 ORTHO05D001069 4.8e-12 76.6 44 79.5
Nitab4.5_0001152g0630 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.8e-12 76.6 48 79.2
Nitab4.5_0000623g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.8e-11 74.7 41 85.4
Nitab4.5_0008293g0010 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.3e-11 73.2 48 70.8
SHI11894 Sapria himalayana HOM05D000533 ORTHO05D001069 1.2e-10 72.0 58 63.8
CAN.G1109.13 Capsicum annuum HOM05D009131 ORTHO05D011137 2.0e-10 71.2 118 38.1
CsaV3_UNG208200 Cucumis sativus L. HOM05D009131 ORTHO05D011137 2.0e-10 71.2 130 33.1
SHI17974 Sapria himalayana HOM05D000533 ORTHO05D001069 2.0e-10 71.2 46 78.3
Nitab4.5_0006806g0150 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.5e-10 70.5 39 84.6
Thecc.08G163000 Theobroma cacao HOM05D000533 ORTHO05D001069 3.5e-10 70.5 51 68.6
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 5.9e-10 69.7 127 33.9
CAN.G1167.18 Capsicum annuum HOM05D009131 ORTHO05D011137 1.3e-09 68.6 118 37.3
Nitab4.5_0001152g0980 Nicotiana tabacum HOM05D000533 ORTHO05D001069 5.0e-09 66.6 91 44.0
CAN.G993.11 Capsicum annuum HOM05D000533 ORTHO05D001069 8.5e-09 65.9 96 44.8
PRCOL_00000735 Prasinoderma coloniale HOM05D000533 ORTHO05D001069 3.2e-08 63.9 48 68.8
Cfa022526 Carpinus fangiana HOM05D000533 ORTHO05D001069 2.1e-07 61.2 48 60.4
COL.COLO4_01459 Corchorus olitorius HOM05D000533 ORTHO05D001069 2.7e-07 60.8 45 68.9
CAN.G1923.1 Capsicum annuum HOM05D009131 ORTHO05D011137 4.7e-07 60.1 107 38.3
Cre09.g405850 Chlamydomonas reinhardtii HOM05D000533 ORTHO05D001069 4.7e-07 60.1 48 64.6
Haze_27200 Corylus avellana HOM05D000533 ORTHO05D001069 1.0e-06 58.9 48 56.2
Sed0003538 Sechium edule HOM05D000533 ORTHO05D001069 1.8e-06 58.2 34 79.4
Haze_26686 Corylus avellana HOM05D000533 ORTHO05D001069 8.8e-06 55.8 48 56.2


User provided reference genes

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