Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG194490 Cucumis sativus L. HOM05D002660 ORTHO05D003902 4.2e-53 211.1 105 100.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 5.5e-13 77.8 83 54.2
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.7e-12 75.5 88 46.6
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-12 74.7 82 50.0
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-12 74.7 83 51.8
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 4.7e-12 74.7 83 51.8
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 3.0e-11 72.0 91 47.3
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 5.2e-11 71.2 88 47.7
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.2e-11 71.2 88 44.3
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-10 69.7 74 55.4
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-10 69.7 74 55.4
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.0e-10 69.3 74 52.7
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-10 68.9 74 50.0
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.6e-10 68.9 88 44.3
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 3.4e-10 68.6 74 54.1
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 4.4e-10 68.2 66 53.0
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 9.8e-10 67.0 54 63.0
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 1.3e-09 66.6 86 48.8
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-09 66.6 66 51.5
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 2.2e-09 65.9 71 53.5
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 6.3e-09 64.3 66 51.5
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 8.3e-09 63.9 76 47.4
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 8.3e-09 63.9 76 47.4
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 8.3e-09 63.9 76 47.4
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 8.3e-09 63.9 76 47.4
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 8.3e-09 63.9 67 50.7
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 1.1e-08 63.5 66 50.0
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.4e-08 63.2 76 47.4
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.4e-08 63.2 73 54.8
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 3.1e-08 62.0 65 53.8
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 3.1e-08 62.0 74 44.6
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 3.1e-08 62.0 66 54.5
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 4.1e-08 61.6 65 52.3
Solyc07g008830.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.0e-08 60.8 68 48.5
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 9.2e-08 60.5 68 48.5
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 9.2e-08 60.5 74 47.3
arahy.Tifrunner.gnm1.ann1.KBVE6B Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-07 60.1 71 45.1
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-07 60.1 50 56.0
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.6e-07 59.7 64 48.4
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 2.0e-07 59.3 84 42.9
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-07 58.9 71 49.3
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-07 58.9 88 42.0
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-07 58.9 74 44.6
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 3.5e-07 58.5 67 47.8
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 3.5e-07 58.5 67 47.8
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 4.5e-07 58.2 67 47.8
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 4.5e-07 58.2 67 47.8
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 5.9e-07 57.8 69 43.5
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 5.9e-07 57.8 74 43.2
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.9e-07 57.8 66 47.0
Nitab4.5_0017902g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.9e-07 57.8 66 47.0
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 5.9e-07 57.8 57 50.9
Peaxi162Scf00651g00640 Petunia axillaris HOM05D002660 ORTHO05D003902 7.7e-07 57.4 49 55.1
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 1.0e-06 57.0 65 52.3
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.0e-06 57.0 65 47.7
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 1.0e-06 57.0 50 56.0
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 1.3e-06 56.6 66 43.9
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.7e-06 56.2 50 52.0
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.7e-06 56.2 65 44.6
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 2.3e-06 55.8 49 57.1
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 2.9e-06 55.5 71 42.3
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 2.9e-06 55.5 71 42.3
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 2.9e-06 55.5 75 41.3
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 3.8e-06 55.1 65 50.8
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 3.8e-06 55.1 65 44.6
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 5.0e-06 54.7 75 41.3
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 5.0e-06 54.7 78 39.7
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.0e-06 54.7 50 52.0
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 6.6e-06 54.3 47 51.1
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 8.6e-06 53.9 75 44.0
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 8.6e-06 53.9 66 43.9


User provided reference genes

Program Settings