Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG123970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.2e-91 339.7 155 100.0
CsaV3_UNG169310 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.9e-74 281.2 134 96.3
CsaV3_UNG113870 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-71 272.3 125 96.0
CsaV3_UNG178370 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.3e-71 272.3 126 98.4
CsaV3_4G028030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.0e-55 218.8 98 98.0
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-55 218.4 99 96.0
CsaV3_UNG142080 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-55 218.4 123 82.9
CsaV3_4G038030 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.1e-55 218.0 97 99.0
CsaV3_UNG070580 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.1e-55 218.0 97 99.0
CsaV3_UNG082660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.1e-55 218.0 97 99.0
CsaV3_UNG098730 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.6e-54 214.5 97 97.9
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 1.8e-52 209.5 98 94.9
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 2.2e-50 202.6 98 90.8
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 6.0e-48 194.5 98 87.8
Dinv14684 Davidia involucrata HOM05D001245 ORTHO05D004475 6.9e-44 181.0 108 75.0
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 1.5e-43 179.9 98 77.6
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 2.0e-43 179.5 98 77.6
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 4.4e-43 178.3 98 77.6
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 5.8e-43 177.9 98 77.6
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 7.6e-43 177.6 98 76.5
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.3e-42 176.8 108 72.2
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 1.3e-42 176.8 96 80.2
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.3e-42 176.8 98 78.6
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.3e-42 176.8 98 77.6
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.2e-42 176.0 116 67.2
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.9e-42 175.6 98 75.5
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 6.4e-42 174.5 98 78.6
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 6.4e-42 174.5 108 73.1
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.9e-41 172.9 108 71.3
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 5.4e-41 171.4 97 75.3
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 7.1e-41 171.0 98 75.5
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 9.3e-41 170.6 98 74.5
Sopen01g030190 Solanum pennellii HOM05D001245 ORTHO05D004475 9.3e-41 170.6 98 74.5
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.2e-40 170.2 104 72.1
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 2.1e-40 169.5 98 74.5
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 2.7e-40 169.1 98 73.5
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 2.7e-40 169.1 98 73.5
Sc26g0002960 Simmondsia chinensis HOM05D001245 ORTHO05D004475 3.5e-40 168.7 96 74.0
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 4.6e-40 168.3 98 73.5
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 4.6e-40 168.3 98 73.5
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 6.0e-40 167.9 98 71.4
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 6.0e-40 167.9 98 71.4
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 6.0e-40 167.9 98 73.5
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 7.8e-40 167.5 98 73.5
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 7.8e-40 167.5 98 73.5
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.0e-39 167.2 108 68.5
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.0e-39 167.2 98 74.5
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.3e-39 166.8 98 71.4
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.7e-39 166.4 98 72.4
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 1.7e-39 166.4 98 72.4
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.3e-39 166.0 96 76.0
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.0e-39 165.6 96 71.9
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.0e-39 165.6 96 71.9
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 3.9e-39 165.2 96 76.0
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 3.9e-39 165.2 96 76.0
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 3.9e-39 165.2 96 75.0
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 5.1e-39 164.9 98 68.4
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 5.1e-39 164.9 98 72.4
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 5.1e-39 164.9 98 74.5
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 6.6e-39 164.5 98 72.4
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 6.6e-39 164.5 98 72.4
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 6.6e-39 164.5 98 71.4
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 8.7e-39 164.1 98 72.4
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 8.7e-39 164.1 98 70.4
CAN.G410.39 Capsicum annuum HOM05D001245 ORTHO05D004475 1.1e-38 163.7 98 72.4
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.5e-38 163.3 98 74.5
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.5e-38 163.3 98 71.4
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.5e-38 163.3 98 69.4
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 2.5e-38 162.5 96 70.8
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 5.6e-38 161.4 98 69.4
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 5.6e-38 161.4 98 69.4
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 5.6e-38 161.4 98 69.4
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 5.6e-38 161.4 98 69.4
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 7.3e-38 161.0 98 69.4
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 9.6e-38 160.6 98 69.4
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 1.6e-37 159.8 98 68.4
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.6e-37 159.8 98 68.4
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.6e-37 159.8 98 71.4
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.6e-37 159.8 115 60.0
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.6e-37 159.8 96 72.9
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 1.6e-37 159.8 94 75.5
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 1.6e-37 159.8 95 73.7
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 2.1e-37 159.5 97 72.2
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 2.8e-37 159.1 98 71.4
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 3.6e-37 158.7 98 68.4
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 4.8e-37 158.3 98 70.4
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.8e-37 158.3 98 67.3
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 1.1e-36 157.1 96 74.0
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 1.8e-36 156.4 98 66.3
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.8e-36 156.4 96 70.8
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 1.8e-36 156.4 98 68.4
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.5e-35 153.3 96 69.8
ATR0561G228 Amborella trichopoda HOM05D001245 ORTHO05D004475 3.4e-35 152.1 104 65.4
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 5.8e-35 151.4 96 68.8
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 7.6e-35 151.0 98 66.3
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 2.9e-34 149.1 98 64.3
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 4.9e-34 148.3 98 63.3
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 6.4e-34 147.9 98 62.2
CDE02G2376 Ceratophyllum demersum HOM05D001245 ORTHO05D004475 8.4e-34 147.5 98 61.2
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 4.2e-33 145.2 98 66.3
SEGI_12378 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 7.1e-33 144.4 92 65.2
HPP92_027721 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.2e-32 143.7 92 68.5
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 7.9e-32 141.0 108 61.1
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 1.0e-31 140.6 98 59.2
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 5.1e-31 138.3 98 60.2
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.5e-30 136.7 97 61.9
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 1.9e-30 136.3 99 57.6
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 2.4e-28 129.4 96 59.4
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 2.4e-28 129.4 96 60.4
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 3.1e-28 129.0 100 57.0
BcaB04g19399 Brassica carinata HOM05D001245 ORTHO05D004475 1.1e-25 120.6 98 55.1
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 3.2e-25 119.0 98 51.0
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 4.5e-19 98.6 97 45.4
CsaV3_5G019970 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.9e-18 95.9 49 77.6
MCO14G357 Micromonas commoda HOM05D001245 ORTHO05D004475 8.2e-13 77.8 82 40.2
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 9.0e-12 74.3 86 38.4
Mapoly0010s0152 Marchantia polymorpha HOM05D004995 ORTHO05D006034 4.6e-08 62.0 96 34.4
MCO11G651 Micromonas commoda HOM05D004995 ORTHO05D007715 6.1e-08 61.6 88 35.2
Cfa023667 Carpinus fangiana HOM05D001245 ORTHO05D004475 1.4e-07 60.5 94 31.9
Actinidia18110 Actinidia chinensis HOM05D006790 ORTHO05D007715 2.3e-07 59.7 77 35.1
Actinidia21007 Actinidia chinensis HOM05D004995 ORTHO05D006034 2.3e-07 59.7 87 35.6
Cpa.g.sc179.52 Carica papaya HOM05D006790 ORTHO05D007715 3.0e-07 59.3 92 31.5
Actinidia36298 Actinidia chinensis HOM05D006790 ORTHO05D007715 3.9e-07 58.9 77 35.1
CAN.G93.39 Capsicum annuum HOM05D006790 ORTHO05D007715 6.7e-07 58.2 78 34.6
COL.COLO4_23251 Corchorus olitorius HOM05D004995 ORTHO05D006034 6.7e-07 58.2 89 33.7
ATR0706G147 Amborella trichopoda HOM05D004995 ORTHO05D006034 8.8e-07 57.8 95 32.6
AagrBONN_evm.TU.Sc2ySwM_368.2357 Anthoceros agrestis HOM05D004995 ORTHO05D006034 8.8e-07 57.8 97 32.0
THA.LOC104822671 Tarenaya hassleriana HOM05D006790 ORTHO05D007715 8.8e-07 57.8 77 33.8
CANSAT25G2589 Cannabis sativa HOM05D004995 ORTHO05D006034 1.1e-06 57.4 89 32.6
AUR62012471 Chenopodium quinoa HOM05D006790 ORTHO05D007715 1.1e-06 57.4 74 36.5
Phvul.004G048500 Phaseolus vulgaris HOM05D006790 ORTHO05D007715 1.1e-06 57.4 77 33.8
Thecc.01G311300 Theobroma cacao HOM05D004995 ORTHO05D006034 1.1e-06 57.4 89 34.8
TAR633G0044 Trochodendron aralioides HOM05D004995 ORTHO05D006034 1.1e-06 57.4 88 34.1
EL10Ac2g04125 Beta vulgaris HOM05D006790 ORTHO05D007715 1.5e-06 57.0 66 37.9
Duzib138G1673 Durio zibethinus HOM05D004995 ORTHO05D006034 1.5e-06 57.0 89 34.8
Aqoxy5G04290 Aquilegia oxysepala HOM05D004995 ORTHO05D006034 2.0e-06 56.6 96 35.4
TWI53G1762 Tripterygium wilfordii HOM05D006790 ORTHO05D007715 2.0e-06 56.6 77 32.5
VMungo0464G1394 Vigna mungo HOM05D006790 ORTHO05D007715 2.0e-06 56.6 77 32.5
CAN.G362.42 Capsicum annuum HOM05D004995 ORTHO05D006034 2.5e-06 56.2 86 32.6
Cfa005817 Carpinus fangiana HOM05D004995 ORTHO05D006034 2.5e-06 56.2 87 35.6
CDE10G1039 Ceratophyllum demersum HOM05D006790 ORTHO05D007715 2.5e-06 56.2 74 35.1
Migut.D00092 Erythranthe guttata HOM05D004995 ORTHO05D006034 2.5e-06 56.2 87 33.3
Glyma.02G013500 Glycine max HOM05D004995 ORTHO05D006034 2.5e-06 56.2 89 32.6
Glyma.10G014100 Glycine max HOM05D004995 ORTHO05D006034 2.5e-06 56.2 89 32.6
SMO367G0571 Selaginella moellendorffii HOM05D004995 ORTHO05D006034 2.5e-06 56.2 99 27.3
Actinidia25841 Actinidia chinensis HOM05D004995 ORTHO05D006034 3.3e-06 55.8 87 34.5
AL2G25680 Arabidopsis lyrata HOM05D006790 ORTHO05D007715 3.3e-06 55.8 72 36.1
Gohir.D12G129700 Gossypium hirsutum HOM05D004995 ORTHO05D006034 3.3e-06 55.8 87 35.6
Gorai.008G140900 Gossypium raimondii HOM05D004995 ORTHO05D006034 3.3e-06 55.8 87 35.6
QL12p020317 Quercus lobata HOM05D004995 ORTHO05D006034 3.3e-06 55.8 87 34.5
SGA_v2.0_scaffold204G41662 Striga asiatica HOM05D006790 ORTHO05D007715 3.3e-06 55.8 77 35.1
HPP92_002051 Vanilla planifolia HOM05D004995 ORTHO05D006034 3.3e-06 55.8 87 31.0
Atru.chr5.1036 Acer truncatum HOM05D004995 ORTHO05D006034 4.3e-06 55.5 87 34.5
Aa31LG5G1780 Aethionema arabicum HOM05D004995 ORTHO05D006034 4.3e-06 55.5 96 33.3
Oeu008461.1 Olea europaea HOM05D004995 ORTHO05D006034 4.3e-06 55.5 87 33.3
QL02p053561 Quercus lobata HOM05D006790 ORTHO05D007715 4.3e-06 55.5 77 32.5
arahy.Tifrunner.gnm1.ann1.KJ11SU Arachis hypogaea HOM05D004995 ORTHO05D006034 5.7e-06 55.1 87 31.0
arahy.Tifrunner.gnm1.ann1.SI6M6S Arachis hypogaea HOM05D004995 ORTHO05D006034 5.7e-06 55.1 87 31.0
Haze_05021 Corylus avellana HOM05D004995 ORTHO05D006034 5.7e-06 55.1 87 34.5
Haze_05025 Corylus avellana HOM05D004995 ORTHO05D006034 5.7e-06 55.1 87 34.5
Nn3g21651 Nelumbo nucifera HOM05D004995 ORTHO05D006034 5.7e-06 55.1 87 33.3
Sopen02g015820 Solanum pennellii HOM05D006790 ORTHO05D007715 5.7e-06 55.1 78 32.1
Zm00001eb014460 Zea mays HOM05D004995 ORTHO05D006034 5.7e-06 55.1 95 29.5
Lalb_Chr02g0146751 Lupinus albus HOM05D004995 ORTHO05D006034 7.4e-06 54.7 87 33.3
Potri.002G197400 Populus trichocarpa HOM05D004995 ORTHO05D006034 7.4e-06 54.7 87 34.5
PGSC0003DMG400026556 Solanum tuberosum HOM05D006790 ORTHO05D007715 7.4e-06 54.7 78 30.8
unitig_736.g22259 Utricularia gibba HOM05D006790 ORTHO05D007715 7.4e-06 54.7 97 35.1
Ah.09g229220 Amaranthus hybridus HOM05D006790 ORTHO05D007715 9.7e-06 54.3 74 33.8
arahy.Tifrunner.gnm1.ann1.9J9R5Y Arachis hypogaea HOM05D006790 ORTHO05D007715 9.7e-06 54.3 77 33.8
Solyc02g065620.3 Solanum lycopersicum HOM05D006790 ORTHO05D007715 9.7e-06 54.3 78 32.1


User provided reference genes

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