Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.5e-177 624.8 301 100.0
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.4e-154 549.7 301 91.4
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 8.2e-126 454.1 426 60.6
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 4.1e-117 425.2 335 66.9
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.3e-111 405.2 200 100.0
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 4.4e-87 325.5 340 54.4
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 9.7e-87 324.3 337 53.4
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 2.2e-86 323.2 336 54.5
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 6.3e-86 321.6 339 52.8
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 2.4e-85 319.7 326 56.1
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 4.1e-85 318.9 345 53.3
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 4.5e-84 315.5 338 53.3
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 7.7e-84 314.7 457 46.6
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.2e-83 313.2 326 54.9
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 5.0e-83 312.0 326 54.3
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 6.5e-83 311.6 319 55.5
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.9e-82 310.1 325 53.5
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 3.2e-82 309.3 330 53.3
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 7.2e-82 308.1 319 52.4
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.7e-81 306.2 326 52.1
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.7e-81 306.2 327 54.1
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 4.7e-81 305.4 316 54.1
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 6.1e-81 305.1 340 50.6
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.0e-80 304.3 337 51.9
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 1.4e-80 303.9 328 52.4
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 3.0e-80 302.8 319 55.5
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 4.0e-80 302.4 315 53.7
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.5e-79 300.4 320 53.4
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.5e-79 300.4 338 51.8
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 2.0e-79 300.1 306 52.9
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.0e-79 300.1 331 52.6
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.0e-79 300.1 316 53.5
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 2.6e-79 299.7 307 53.4
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 2.6e-79 299.7 317 53.0
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.4e-79 299.3 329 52.6
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 4.4e-79 298.9 307 53.4
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 4.4e-79 298.9 332 51.2
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 9.8e-79 297.7 325 52.0
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 9.8e-79 297.7 326 51.2
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.7e-78 297.0 321 50.8
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.7e-78 297.0 331 49.8
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.7e-78 297.0 321 50.8
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.1e-77 294.3 307 53.4
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.4e-77 293.9 349 49.9
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 4.1e-77 292.4 324 50.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 5.4e-77 292.0 327 50.5
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 7.0e-77 291.6 351 49.0
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 4.5e-76 288.9 320 50.0
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 4.5e-76 288.9 328 49.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 5.9e-76 288.5 319 49.8
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.0e-75 287.7 341 48.7
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.3e-75 287.3 319 49.8
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 2.9e-75 286.2 330 49.7
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 3.8e-75 285.8 333 48.9
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 4.2e-74 282.3 355 47.6
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 9.5e-74 281.2 342 48.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 2.8e-73 279.6 323 50.5
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 4.7e-73 278.9 326 50.3
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.8e-72 276.9 332 48.2
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 7.5e-71 271.6 311 49.5
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 1.3e-70 270.8 302 51.0
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.7e-70 270.4 313 47.9
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 1.7e-70 270.4 331 48.9
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.3e-70 268.1 305 48.9
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.1e-69 267.7 301 50.8
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 5.4e-69 265.4 337 46.0
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 7.0e-69 265.0 318 48.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.0e-68 263.5 385 43.9
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.7e-68 263.1 342 45.6
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 2.5e-66 256.5 298 49.7
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 4.3e-66 255.8 298 51.3
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.0e-63 246.9 285 49.8
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 7.5e-63 245.0 333 43.5
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 9.2e-61 238.0 326 44.8
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.0e-60 236.9 305 43.9
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 3.5e-60 236.1 341 43.1
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 4.6e-60 235.7 255 52.9
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.6e-59 231.9 339 43.1
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 3.3e-58 229.6 297 45.8
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-57 227.3 202 64.4
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 3.1e-56 223.0 360 40.3
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.6e-55 219.9 321 44.2
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 4.9e-54 215.7 182 61.5
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 2.7e-52 209.9 331 41.7
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.7e-49 199.1 285 42.5
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 7.5e-47 191.8 343 38.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.7e-46 190.7 292 43.5
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.1e-44 183.7 241 46.9
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 7.8e-44 181.8 343 35.9
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 5.1e-43 179.1 238 47.1
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 4.3e-42 176.0 254 44.1
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.7e-41 172.6 236 48.3
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 6.2e-41 172.2 242 45.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 6.2e-41 172.2 148 58.1
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.1e-40 171.4 259 37.5
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.8e-40 170.6 224 47.8
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 2.4e-40 170.2 194 50.5
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 4.0e-40 169.5 229 46.7
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 1.5e-39 167.5 231 45.9
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 9.9e-39 164.9 219 47.5
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 6.4e-38 162.2 298 37.9
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.1e-36 157.1 227 43.2
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.0e-35 154.8 68 100.0
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 5.1e-35 152.5 102 71.6
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.9e-34 150.6 297 36.0
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 4.0e-32 142.9 98 67.3
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 8.4e-30 135.2 85 76.5
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.9e-29 134.0 213 41.3
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 5.4e-29 132.5 212 41.5
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 7.1e-29 132.1 214 40.7
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.5e-23 114.4 86 64.0
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.0e-23 114.0 81 64.2
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 6.4e-22 109.0 196 37.8
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 8.4e-22 108.6 302 29.1
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.8e-19 100.9 185 39.5
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 5.1e-19 99.4 65 76.9
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.1e-17 94.0 86 54.7
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 3.1e-16 90.1 67 58.2
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.5e-15 87.8 61 65.6
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.7e-14 84.3 58 70.7
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 2.1e-12 77.4 90 53.3
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 4.6e-12 76.3 232 31.0
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 5.1e-11 72.8 40 77.5
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 3.3e-10 70.1 60 61.7


User provided reference genes

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