Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.0e-104 381.7 175 100.0
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 1.9e-74 282.7 221 65.2
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 2.0e-71 272.7 206 67.0
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 4.5e-68 261.5 211 61.1
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 5.0e-67 258.1 210 60.0
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 8.5e-67 257.3 215 56.7
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 4.2e-66 255.0 211 58.8
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 9.4e-66 253.8 174 71.8
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 1.6e-65 253.1 208 57.7
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 3.6e-65 251.9 206 58.7
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 3.6e-65 251.9 208 59.1
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 1.4e-64 250.0 211 57.8
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 2.3e-64 249.2 208 59.1
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 3.9e-64 248.4 209 58.4
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 3.9e-64 248.4 208 57.7
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 5.2e-64 248.1 206 59.2
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 5.2e-64 248.1 213 58.2
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 6.7e-64 247.7 208 57.7
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 1.1e-63 246.9 208 57.2
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.3e-63 245.4 209 56.0
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 5.7e-63 244.6 209 56.0
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 7.4e-63 244.2 208 56.7
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 2.2e-62 242.7 205 56.6
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 2.2e-62 242.7 208 57.2
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 3.7e-62 241.9 208 57.7
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 4.8e-62 241.5 215 56.3
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.1e-61 240.4 208 55.8
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.4e-61 239.2 208 56.2
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 2.4e-61 239.2 208 56.2
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.3e-61 238.0 206 54.4
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 5.3e-61 238.0 206 54.4
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 5.3e-61 238.0 244 51.6
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 5.3e-61 238.0 212 54.7
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.2e-60 236.9 208 54.3
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 4.5e-60 235.0 208 54.3
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.9e-60 234.6 219 52.1
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 7.7e-60 234.2 205 56.1
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.0e-59 233.8 208 53.4
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 1.3e-59 233.4 208 54.3
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 2.2e-59 232.6 206 54.4
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 6.5e-59 231.1 201 55.7
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 8.5e-59 230.7 208 52.9
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 8.5e-59 230.7 200 56.5
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 1.5e-58 229.9 210 54.8
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 3.2e-58 228.8 213 52.6
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 3.2e-58 228.8 201 55.2
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 7.2e-58 227.6 209 50.7
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 1.6e-57 226.5 208 53.8
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.3e-56 222.6 208 52.9
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 2.3e-56 222.6 210 52.9
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 5.2e-56 221.5 209 51.7
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 8.8e-56 220.7 201 53.2
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 8.8e-56 220.7 201 54.2
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 8.8e-56 220.7 208 51.4
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 2.6e-55 219.2 208 50.5
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.4e-55 218.4 158 69.6
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 5.7e-55 218.0 208 52.4
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 7.5e-55 217.6 200 53.0
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 7.5e-55 217.6 208 51.9
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.3e-54 216.9 210 50.5
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.7e-54 216.5 208 51.9
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 3.7e-54 215.3 206 51.9
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 1.4e-53 213.4 208 51.4
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 1.4e-53 213.4 200 53.5
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 1.8e-53 213.0 151 66.2
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 3.1e-53 212.2 200 52.0
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 7.0e-53 211.1 259 44.4
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 9.1e-53 210.7 200 51.5
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 9.1e-53 210.7 144 74.3
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 1.2e-52 210.3 208 49.0
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 2.7e-52 209.1 200 51.5
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 2.7e-52 209.1 200 51.5
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 2.7e-52 209.1 208 51.0
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 3.8e-51 205.3 185 54.6
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 4.7e-49 198.4 232 44.4
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 6.1e-49 198.0 178 53.9
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 8.0e-49 197.6 185 51.9
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 3.0e-48 195.7 188 53.2
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 6.8e-48 194.5 201 50.7
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 2.0e-47 193.0 177 53.1
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 5.7e-47 191.4 177 54.2
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 1.3e-46 190.3 206 47.6
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 8.3e-46 187.6 177 52.5
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 5.4e-45 184.9 173 52.6
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 2.5e-42 176.0 183 48.1
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.2e-41 173.7 131 64.1
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 2.1e-41 172.9 168 50.6
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 3.6e-41 172.2 164 53.0
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 1.0e-40 170.6 190 47.4
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.3e-40 169.5 188 47.9
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 3.7e-38 162.2 146 54.1
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 7.3e-34 147.9 205 35.6
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 5.2e-32 141.7 90 70.0
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 2.2e-30 136.3 139 48.9
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.7e-30 135.6 93 64.5
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 3.7e-30 135.6 205 34.6
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 1.4e-29 133.7 92 66.3
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.4e-29 132.9 92 64.1
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 9.2e-29 131.0 99 65.7
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.2e-28 130.6 93 63.4
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-27 125.6 102 64.7
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 3.9e-27 125.6 90 63.3
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 3.9e-27 125.6 80 71.2
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.9e-26 123.2 101 64.4
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 7.3e-26 121.3 83 62.7
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 5.2e-24 115.2 100 62.0
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 5.8e-23 111.7 79 62.0
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 1.7e-22 110.2 175 38.3
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 3.5e-20 102.4 98 51.0
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.6e-17 93.6 94 50.0
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.0e-16 89.0 38 100.0
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 4.4e-15 85.5 80 50.0
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-13 80.9 38 89.5
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 5.4e-13 78.6 83 48.2
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 7.8e-12 74.7 234 22.2
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 1.5e-10 70.5 77 40.3
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 6.8e-08 61.6 38 63.2
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 2.9e-06 56.2 39 66.7
arahy.Tifrunner.gnm1.ann1.FDL07N Arachis hypogaea HOM05D001003 ORTHO05D003884 6.4e-06 55.1 33 66.7


User provided reference genes

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