Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.8e-62 240.0 122 100.0
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.8e-62 240.0 122 100.0
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 8.3e-53 210.3 185 65.4
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 8.3e-53 210.3 185 65.4
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.4e-46 188.0 96 99.0
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.1e-44 181.4 95 93.7
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.5e-43 178.3 89 98.9
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.5e-43 178.3 89 98.9
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.5e-43 178.3 89 98.9
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.5e-43 178.3 89 98.9
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.5e-43 178.3 89 98.9
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.6e-43 177.9 96 92.7
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.6e-43 177.9 96 91.7
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-42 176.0 89 97.8
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-42 176.0 89 97.8
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.7e-42 176.0 89 97.8
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.6e-42 174.1 105 83.8
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-41 173.3 96 91.7
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-41 173.3 96 91.7
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-41 172.9 96 91.7
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-41 172.6 96 88.5
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-41 172.6 96 90.6
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-41 172.6 96 90.6
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-41 172.6 96 90.6
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.6e-41 171.0 96 87.5
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.6e-41 171.0 93 92.5
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.6e-41 171.0 96 89.6
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.6e-41 171.0 96 89.6
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.5e-41 170.2 96 90.6
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.2e-40 169.9 90 94.4
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.8e-40 168.7 96 90.6
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.8e-40 168.7 96 87.5
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.6e-40 168.3 93 90.3
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.6e-40 168.3 96 87.5
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-39 166.4 96 90.6
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-39 166.0 104 83.7
MELO3C028207.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.2e-39 164.5 92 88.0
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.2e-39 164.5 93 89.2
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.8e-39 164.1 96 89.6
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-38 162.5 98 83.7
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.6e-38 162.2 93 89.2
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.4e-38 161.8 96 84.4
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-36 156.8 96 82.3
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-36 156.8 96 82.3
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.1e-36 154.8 96 81.2
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.0e-35 151.0 94 78.7
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.7e-34 149.4 88 83.0
MELO3C027811.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.5e-33 146.4 84 85.7
CsaV3_6G020220 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.7e-32 141.4 99 74.7
CsaV3_6G021250 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.7e-32 141.4 99 74.7
CsaV3_6G020190 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.4e-31 139.8 99 73.7
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-31 139.4 80 87.5
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 5.2e-31 137.9 93 74.2
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 1.5e-30 136.3 95 69.5
CsaV3_6G021230 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.4e-30 134.8 92 73.9
MELO3C028008.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.6e-30 134.0 75 89.3
MELO3C028100.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.4e-29 131.0 74 86.5
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.6e-27 124.8 81 72.8
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.1e-25 120.2 95 62.1
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-25 119.0 66 87.9
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 9.6e-25 117.1 95 60.0
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.8e-24 115.5 64 87.5
CsaV3_UNG072590 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.6e-24 115.2 57 100.0
Sed0025474 Sechium edule HOM05D003146 ORTHO05D001819 4.8e-24 114.8 105 54.3
CsaV3_6G021220 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.1e-20 103.6 70 72.9
MELO3C031703.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.4e-20 102.4 55 87.3
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 7.1e-20 100.9 93 51.6
MELO3C027765.2 Cucumis melo HOM05D003146 ORTHO05D001819 9.3e-20 100.5 59 89.8
MELO3C027757.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.0e-18 97.1 62 83.9
CsaV3_6G020170 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.6e-18 94.4 48 95.8
CsaV3_6G028620 Cucumis sativus L. HOM05D003146 ORTHO05D001819 6.6e-18 94.4 58 81.0
ClCG07G004740 Citrullus lanatus HOM05D003146 ORTHO05D001819 3.1e-15 85.5 95 47.4
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 9.0e-15 84.0 94 44.7
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 1.2e-14 83.6 114 38.6
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 4.5e-14 81.6 94 43.6
MELO3C030071.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.7e-13 79.7 43 90.7
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 1.7e-13 79.7 94 45.7
MELO3C021269.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.9e-13 78.2 43 88.4
MELO3C030063.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.4e-13 77.8 43 88.4
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.9e-12 76.3 94 43.6
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 3.2e-12 75.5 94 43.6
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 3.2e-12 75.5 94 43.6
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 3.2e-12 75.5 94 44.7
MELO3C027703.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-12 75.5 43 83.7
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 3.2e-12 75.5 94 41.5
MD16G1147400 Malus domestica HOM05D003146 ORTHO05D001819 4.2e-12 75.1 88 38.6
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 7.1e-12 74.3 94 41.5
PGSC0003DMG400018189 Solanum tuberosum HOM05D003146 ORTHO05D001819 7.1e-12 74.3 94 40.4
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.2e-11 73.6 94 42.6
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 2.1e-11 72.8 94 44.7
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 2.7e-11 72.4 94 41.5
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 3.5e-11 72.0 94 41.5
MELO3C034828.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.6e-11 71.6 43 81.4
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 4.6e-11 71.6 93 41.9
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 6.0e-11 71.2 96 42.7
CAN.G338.40 Capsicum annuum HOM05D003146 ORTHO05D001819 1.0e-10 70.5 94 40.4
PGR004G1752 Punica granatum HOM05D003146 ORTHO05D001819 1.0e-10 70.5 94 40.4
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.3e-10 70.1 94 42.6
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.3e-10 70.1 94 42.6
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.3e-10 70.1 94 42.6
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.3e-10 70.1 94 42.6
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 1.3e-10 70.1 94 42.6
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 1.8e-10 69.7 94 42.6
Sed0005258 Sechium edule HOM05D003146 ORTHO05D001819 1.8e-10 69.7 100 41.0
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 3.0e-10 68.9 94 43.6
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 5.1e-10 68.2 84 40.5
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.1e-10 68.2 92 35.9
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 5.1e-10 68.2 92 35.9
MELO3C030066.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.7e-10 67.8 36 83.3
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 6.7e-10 67.8 94 38.3
CAN.G303.69 Capsicum annuum HOM05D003146 ORTHO05D001819 8.7e-10 67.4 88 42.0
MELO3C034875.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.7e-10 67.4 38 81.6
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 8.7e-10 67.4 95 40.0
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 8.7e-10 67.4 95 40.0
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 8.7e-10 67.4 93 37.6
MELO3C019863.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-09 67.0 36 88.9
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 1.5e-09 66.6 94 40.4
MELO3C021270.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.5e-09 65.9 92 37.0
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 2.5e-09 65.9 100 33.0
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 4.3e-09 65.1 93 36.6
CsaV3_6G022340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.3e-09 65.1 92 37.0
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 4.3e-09 65.1 105 36.2
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 5.6e-09 64.7 93 39.8
Actinidia28299 Actinidia chinensis HOM05D003146 ORTHO05D001819 9.6e-09 63.9 85 37.6
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 9.6e-09 63.9 94 37.2
Sed0019418 Sechium edule HOM05D003146 ORTHO05D001819 1.3e-08 63.5 92 34.8
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 1.6e-08 63.2 94 42.6
MELO3C034865.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.6e-08 63.2 34 85.3
Nitab4.5_0005440g0020 Nicotiana tabacum HOM05D003146 ORTHO05D001819 1.6e-08 63.2 94 37.2
MELO3C030062.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.8e-08 62.4 34 85.3
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 3.7e-08 62.0 93 38.7
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 3.7e-08 62.0 93 34.4
MELO3C027826.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.7e-08 62.0 36 77.8
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 3.7e-08 62.0 93 36.6
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 4.8e-08 61.6 113 34.5
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 4.8e-08 61.6 95 34.7
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 4.8e-08 61.6 95 34.7
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 4.8e-08 61.6 93 33.3
Nitab4.5_0000035g0080 Nicotiana tabacum HOM05D003146 ORTHO05D001819 6.2e-08 61.2 94 36.2
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 6.2e-08 61.2 93 36.6
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 6.2e-08 61.2 94 34.0
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 1.1e-07 60.5 93 34.4
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 1.1e-07 60.5 95 33.7
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 1.1e-07 60.5 95 33.7
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 1.1e-07 60.5 88 38.6
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 1.4e-07 60.1 125 31.2
SGA_v2.0_scaffold169G38700 Striga asiatica HOM05D007827 ORTHO05D009749 1.8e-07 59.7 80 35.0
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 2.4e-07 59.3 115 34.8
Psat3g149840 Pisum sativum HOM05D007995 ORTHO05D001819 2.4e-07 59.3 94 37.2
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.4e-07 59.3 93 36.6
TPR.G32889 Trifolium pratense HOM05D007995 ORTHO05D001819 3.1e-07 58.9 95 32.6
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 4.0e-07 58.5 93 34.4
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 4.0e-07 58.5 91 39.6
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 6.9e-07 57.8 82 34.1
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 9.0e-07 57.4 117 31.6
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 1.2e-06 57.0 99 32.3
PGSC0003DMG400040362 Solanum tuberosum HOM05D003146 ORTHO05D001819 1.2e-06 57.0 87 35.6
BraA01t03769Z Brassica rapa HOM05D003146 ORTHO05D001819 1.5e-06 56.6 83 39.8
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 2.6e-06 55.8 93 38.7
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 2.6e-06 55.8 93 32.3
A01p37120 Brassica napus HOM05D003146 ORTHO05D001819 3.4e-06 55.5 83 38.6
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 3.4e-06 55.5 93 32.3
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 3.4e-06 55.5 102 30.4
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 3.4e-06 55.5 92 35.9
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 3.4e-06 55.5 94 33.0
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 4.5e-06 55.1 111 32.4
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 4.5e-06 55.1 111 32.4
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 4.5e-06 55.1 111 32.4
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 4.5e-06 55.1 111 32.4
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 4.5e-06 55.1 93 32.3
FvH4_4g20820 Fragaria vesca HOM05D017096 ORTHO05D019131 4.5e-06 55.1 86 33.7
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 5.8e-06 54.7 97 36.1
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 7.6e-06 54.3 115 32.2
MELO3C028003.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.6e-06 54.3 26 92.3
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 7.6e-06 54.3 116 31.0
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 7.6e-06 54.3 116 31.0
Lalb_Chr07g0181461 Lupinus albus HOM05D001445 ORTHO05D003404 7.6e-06 54.3 100 32.0
Lalb_Chr11g0066641 Lupinus albus HOM05D001445 ORTHO05D003404 7.6e-06 54.3 100 33.0
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 7.6e-06 54.3 94 30.9
AT3G05741 Arabidopsis thaliana HOM05D008745 ORTHO05D010941 1.0e-05 53.9 96 32.3
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 1.0e-05 53.9 93 31.2
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 1.0e-05 53.9 93 31.2
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 1.0e-05 53.9 93 31.2
Medtr6g024035 Medicago truncatula HOM05D007995 ORTHO05D001819 1.0e-05 53.9 94 33.0


User provided reference genes

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