Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 3.1e-68 261.5 122 100.0
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.1e-68 260.0 122 99.2
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.5e-65 250.0 119 98.3
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.1e-64 248.8 117 100.0
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.0e-63 244.6 118 97.5
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 2.2e-61 238.8 118 95.8
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.4e-60 235.3 118 94.1
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.7e-58 229.2 118 88.1
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 1.3e-53 213.0 118 81.4
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 3.7e-53 211.5 118 80.5
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 4.9e-53 211.1 117 82.9
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 8.3e-53 210.3 118 80.5
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 8.3e-53 210.3 118 79.7
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 8.3e-53 210.3 118 82.2
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 1.4e-52 209.5 118 79.7
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 1.9e-52 209.1 118 79.7
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 4.1e-52 208.0 117 79.5
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 4.1e-52 208.0 118 78.0
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 5.4e-52 207.6 118 79.7
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 1.6e-51 206.1 117 79.5
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 3.5e-51 204.9 118 79.7
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 4.6e-51 204.5 118 78.8
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 7.8e-51 203.8 117 80.3
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 1.0e-50 203.4 118 78.8
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.0e-50 203.4 117 78.6
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 1.3e-50 203.0 117 76.9
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 1.3e-50 203.0 117 78.6
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 1.3e-50 203.0 118 77.1
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 3.0e-50 201.8 118 77.1
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 3.0e-50 201.8 118 77.1
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 3.0e-50 201.8 118 77.1
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 3.0e-50 201.8 118 79.7
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 3.9e-50 201.4 117 77.8
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 3.9e-50 201.4 118 78.0
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 6.6e-50 200.7 118 78.8
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 8.6e-50 200.3 117 78.6
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 8.6e-50 200.3 117 77.8
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 1.1e-49 199.9 118 78.8
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 1.1e-49 199.9 118 78.8
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 1.1e-49 199.9 118 76.3
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 1.1e-49 199.9 117 77.8
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.5e-49 199.5 118 77.1
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.9e-49 199.1 117 78.6
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 2.5e-49 198.7 116 76.7
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 7.3e-49 197.2 117 74.4
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 7.3e-49 197.2 118 75.4
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 7.3e-49 197.2 118 78.0
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 7.3e-49 197.2 118 76.3
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 7.3e-49 197.2 117 74.4
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 7.3e-49 197.2 118 74.6
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 9.5e-49 196.8 118 76.3
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.6e-48 196.1 118 74.6
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 2.1e-48 195.7 118 73.7
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 2.1e-48 195.7 118 73.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.1e-48 195.7 110 79.1
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.1e-48 195.7 118 73.7
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 2.1e-48 195.7 118 73.7
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 2.1e-48 195.7 118 73.7
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 2.8e-48 195.3 110 80.0
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 2.8e-48 195.3 108 80.6
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.8e-48 195.3 118 73.7
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.8e-48 195.3 118 74.6
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 2.8e-48 195.3 118 74.6
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 4.7e-48 194.5 109 78.9
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 4.7e-48 194.5 118 75.4
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 4.7e-48 194.5 116 75.0
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.1e-47 193.4 117 76.9
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 1.1e-47 193.4 118 75.4
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 1.1e-47 193.4 115 73.9
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.4e-47 193.0 125 72.8
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 1.4e-47 193.0 107 81.3
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.8e-47 192.6 110 78.2
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 1.8e-47 192.6 118 76.3
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 2.3e-47 192.2 119 76.5
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 3.1e-47 191.8 120 76.7
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 3.1e-47 191.8 117 70.9
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 3.1e-47 191.8 118 72.9
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 3.1e-47 191.8 125 68.8
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 4.0e-47 191.4 115 74.8
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 4.0e-47 191.4 115 73.0
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 4.0e-47 191.4 115 73.9
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 5.2e-47 191.0 115 74.8
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 6.8e-47 190.7 118 72.9
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 6.8e-47 190.7 115 73.9
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 8.9e-47 190.3 118 72.9
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 8.9e-47 190.3 118 70.3
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 8.9e-47 190.3 118 73.7
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 1.2e-46 189.9 118 71.2
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 1.2e-46 189.9 117 75.2
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.2e-46 189.9 91 100.0
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 1.5e-46 189.5 116 74.1
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 9.8e-46 186.8 116 73.3
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 9.8e-46 186.8 115 72.2
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 3.7e-45 184.9 121 73.6
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 1.9e-44 182.6 156 57.1
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 2.4e-44 182.2 117 70.9
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 4.6e-43 177.9 110 74.5
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 7.8e-43 177.2 155 57.4
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 3.0e-42 175.3 126 63.5
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 4.3e-41 171.4 101 76.2
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 7.3e-41 170.6 171 50.9
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 4.7e-40 167.9 116 65.5
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 6.2e-40 167.5 113 71.7
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 3.1e-39 165.2 118 62.7
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.2e-38 163.3 122 63.9
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 3.7e-37 158.3 117 59.8
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 1.1e-36 156.8 75 94.7
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 2.7e-35 152.1 122 55.7
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 3.0e-34 148.7 120 55.0
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 3.0e-34 148.7 97 72.2
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.6e-33 144.4 67 98.5
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 3.6e-32 141.7 122 48.4
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 8.9e-31 137.1 116 59.5
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 2.0e-30 136.0 93 68.8
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 4.4e-30 134.8 74 79.7
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.3e-29 133.3 122 48.4
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 2.9e-29 132.1 105 61.0
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 1.4e-28 129.8 85 67.1
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 6.2e-24 114.4 67 71.6
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 1.1e-23 113.6 73 63.0
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.9e-20 102.8 48 100.0
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.9e-20 102.8 48 100.0
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 2.3e-18 95.9 85 52.9
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 2.6e-14 82.4 43 79.1
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.1e-12 77.0 33 100.0
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 1.3e-10 70.1 151 27.2
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 3.9e-10 68.6 45 71.1
BcaC05g29489 Brassica carinata HOM05D005821 ORTHO05D006649 8.1e-08 60.8 32 87.5


User provided reference genes

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