Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.7e-47 190.3 92 100.0
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.7e-47 190.3 92 100.0
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.7e-47 190.3 92 100.0
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 8.8e-47 189.9 91 100.0
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.0e-46 188.7 92 98.9
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.7e-45 185.7 92 97.8
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.8e-44 182.2 92 95.7
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 9.1e-44 179.9 92 95.7
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 6.5e-42 173.7 92 88.0
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 1.3e-37 159.5 92 82.6
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 2.2e-37 158.7 92 80.4
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 4.8e-37 157.5 92 81.5
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 6.3e-37 157.1 92 80.4
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.3e-37 157.1 92 79.3
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 6.3e-37 157.1 92 78.3
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 8.2e-37 156.8 92 80.4
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 1.1e-36 156.4 92 80.4
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 1.4e-36 156.0 92 78.3
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 1.4e-36 156.0 92 78.3
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.4e-36 156.0 90 83.3
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 2.4e-36 155.2 92 79.3
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 3.1e-36 154.8 92 78.3
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 4.1e-36 154.5 90 78.9
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 4.1e-36 154.5 92 78.3
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 4.1e-36 154.5 90 82.2
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 7.0e-36 153.7 92 77.2
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 1.6e-35 152.5 90 78.9
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 2.0e-35 152.1 92 78.3
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 2.0e-35 152.1 92 76.1
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 2.0e-35 152.1 92 78.3
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 2.6e-35 151.8 92 79.3
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 3.5e-35 151.4 90 78.9
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 4.5e-35 151.0 92 77.2
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 4.5e-35 151.0 90 77.8
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 7.7e-35 150.2 92 75.0
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 7.7e-35 150.2 90 78.9
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.0e-34 149.8 92 75.0
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 1.0e-34 149.8 92 75.0
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.0e-34 149.8 90 77.8
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 1.3e-34 149.4 90 75.6
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.3e-34 149.4 90 77.8
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.3e-34 149.4 92 75.0
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 1.3e-34 149.4 90 78.9
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 1.3e-34 149.4 92 76.1
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 2.2e-34 148.7 90 76.7
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 2.2e-34 148.7 92 77.2
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 2.2e-34 148.7 92 76.1
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 2.9e-34 148.3 90 78.9
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 5.0e-34 147.5 92 77.2
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 5.0e-34 147.5 92 77.2
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 5.0e-34 147.5 90 73.3
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 5.0e-34 147.5 92 72.8
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 6.5e-34 147.1 92 73.9
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 6.5e-34 147.1 92 73.9
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 8.5e-34 146.7 93 78.5
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 8.5e-34 146.7 92 73.9
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 8.5e-34 146.7 92 75.0
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 1.1e-33 146.4 92 76.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 1.1e-33 146.4 90 75.6
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 1.1e-33 146.4 92 72.8
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.5e-33 146.0 90 76.7
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.5e-33 146.0 92 75.0
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 1.5e-33 146.0 92 71.7
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 1.9e-33 145.6 90 74.4
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 1.9e-33 145.6 91 74.7
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 2.5e-33 145.2 90 72.2
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 2.5e-33 145.2 90 73.3
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 3.2e-33 144.8 90 72.2
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 3.2e-33 144.8 92 73.9
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 3.2e-33 144.8 90 72.2
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 4.2e-33 144.4 92 73.9
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 4.2e-33 144.4 90 72.2
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 5.5e-33 144.1 92 75.0
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 7.2e-33 143.7 90 74.4
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 9.4e-33 143.3 90 71.1
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 9.4e-33 143.3 90 72.2
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 1.6e-32 142.5 90 71.1
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 2.1e-32 142.1 92 73.9
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 2.1e-32 142.1 91 75.8
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.1e-32 142.1 92 70.7
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 2.1e-32 142.1 92 77.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.7e-32 141.7 83 78.3
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 3.6e-32 141.4 83 79.5
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 6.1e-32 140.6 92 70.7
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 8.0e-32 140.2 83 78.3
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 8.0e-32 140.2 94 74.5
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 1.4e-31 139.4 92 71.7
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 1.8e-31 139.0 91 70.3
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 1.8e-31 139.0 90 68.9
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 2.3e-31 138.7 80 81.2
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 2.3e-31 138.7 92 67.4
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 4.0e-31 137.9 80 78.8
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 4.0e-31 137.9 80 78.8
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 4.0e-31 137.9 92 71.7
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 5.2e-31 137.5 89 74.2
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 7.5e-30 133.7 88 70.5
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 2.2e-29 132.1 90 68.9
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 2.8e-29 131.7 92 64.1
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 6.3e-29 130.6 89 68.5
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 6.3e-29 130.6 130 52.3
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 1.4e-28 129.4 128 53.9
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 4.1e-28 127.9 78 73.1
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 1.7e-26 122.5 92 60.9
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 2.9e-26 121.7 95 63.2
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.1e-25 119.8 74 74.3
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 1.5e-25 119.4 90 61.1
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 8.0e-24 113.6 86 68.6
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 5.7e-22 107.5 95 53.7
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 7.5e-22 107.1 93 53.8
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.8e-20 102.4 48 100.0
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.8e-20 102.4 48 100.0
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.8e-20 102.4 48 100.0
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 5.4e-20 100.9 70 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 7.0e-20 100.5 93 46.2
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 1.6e-19 99.4 96 49.0
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 1.0e-18 96.7 48 93.8
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.2e-16 89.7 78 59.0
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 4.0e-15 84.7 47 80.9
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 8.8e-15 83.6 92 51.1
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 2.8e-13 78.6 58 62.1
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 1.3e-10 69.7 46 71.7
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 2.9e-10 68.6 48 60.4
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 5.0e-10 67.8 62 51.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.2e-08 63.2 42 61.9
BcaC05g29489 Brassica carinata HOM05D005821 ORTHO05D006649 4.7e-08 61.2 32 87.5


User provided reference genes

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