Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 7.6e-29 129.8 65 100.0
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.4e-27 124.8 65 96.9
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 7.1e-27 123.2 65 93.8
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 8.1e-23 109.8 65 83.1
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 1.3e-17 92.4 65 72.3
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.8e-17 92.0 65 66.2
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 2.3e-17 91.7 65 66.2
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 5.1e-17 90.5 65 67.7
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.5e-16 89.0 65 66.2
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.5e-16 89.0 65 69.2
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.9e-16 88.6 65 67.7
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 2.5e-16 88.2 62 69.4
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 3.3e-16 87.8 65 66.2
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.3e-16 87.8 65 66.2
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.3e-16 87.8 65 66.2
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 3.3e-16 87.8 65 67.7
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 5.7e-16 87.0 65 64.6
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 9.6e-16 86.3 65 64.6
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 9.6e-16 86.3 65 66.2
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.6e-15 85.5 65 63.1
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 2.1e-15 85.1 62 66.1
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 2.8e-15 84.7 65 63.1
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 2.8e-15 84.7 65 63.1
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 3.7e-15 84.3 63 66.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 3.7e-15 84.3 65 64.6
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 8.2e-15 83.2 65 61.5
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 1.1e-14 82.8 63 65.1
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 1.4e-14 82.4 62 66.1
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.8e-14 82.0 65 61.5
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.8e-14 82.0 65 60.0
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.4e-14 81.6 65 60.0
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 2.4e-14 81.6 65 61.5
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 2.4e-14 81.6 65 60.0
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.4e-14 81.6 62 64.5
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.1e-14 81.3 65 60.0
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 3.1e-14 81.3 65 64.6
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 5.3e-14 80.5 65 60.0
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 6.9e-14 80.1 65 58.5
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 6.9e-14 80.1 65 60.0
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 6.9e-14 80.1 65 58.5
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 9.0e-14 79.7 65 60.0
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 1.2e-13 79.3 65 56.9
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.5e-13 79.0 65 61.5
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 2.0e-13 78.6 65 56.9
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 2.0e-13 78.6 65 58.5
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 4.5e-13 77.4 65 55.4
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 4.5e-13 77.4 62 59.7
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 7.6e-13 76.6 65 58.5
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 1.0e-12 76.3 62 59.7
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.3e-12 75.9 60 61.7
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 1.7e-12 75.5 65 53.8
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 1.7e-12 75.5 63 57.1
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 1.7e-12 75.5 63 58.7
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 1.7e-12 75.5 62 59.7
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 2.2e-12 75.1 65 60.0
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 2.9e-12 74.7 62 58.1
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 3.8e-12 74.3 65 58.5
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 3.8e-12 74.3 65 53.8
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 3.8e-12 74.3 62 56.5
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.8e-12 74.3 62 58.1
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 3.8e-12 74.3 65 55.4
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.8e-12 74.3 65 58.5
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 3.8e-12 74.3 65 52.3
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 6.5e-12 73.6 65 55.4
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 6.5e-12 73.6 63 58.7
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 8.4e-12 73.2 62 59.7
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 8.4e-12 73.2 65 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 1.1e-11 72.8 62 51.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.1e-11 72.8 62 54.8
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.4e-11 72.4 58 60.3
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 1.9e-11 72.0 65 49.2
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 2.5e-11 71.6 62 58.1
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 3.2e-11 71.2 62 58.1
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 3.2e-11 71.2 62 54.8
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 4.2e-11 70.9 65 58.5
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 5.5e-11 70.5 62 56.5
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 5.5e-11 70.5 62 58.1
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 5.5e-11 70.5 62 58.1
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 9.3e-11 69.7 59 62.7
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 1.6e-10 68.9 62 58.1
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 1.3e-09 65.9 63 49.2
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 2.3e-09 65.1 65 43.1
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 3.0e-09 64.7 62 48.4
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 3.9e-09 64.3 62 48.4
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 5.1e-09 63.9 59 52.5
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 1.9e-08 62.0 90 42.2
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 4.3e-08 60.8 56 55.4
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 4.3e-08 60.8 60 45.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.6e-07 58.9 29 100.0
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 4.8e-07 57.4 62 46.8
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 1.1e-06 56.2 63 49.2
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 4.1e-06 54.3 36 72.2
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 9.0e-06 53.1 62 45.2


User provided reference genes

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