Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 0.0e+00 1176.0 635 100.0
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 0.0e+00 1115.9 635 95.9
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 4.7e-248 861.3 708 69.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.5e-233 812.4 635 70.7
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-200 703.0 637 61.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.4e-135 486.9 528 50.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-131 474.6 642 45.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.0e-126 457.2 567 47.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 2.7e-126 456.8 563 48.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.8e-122 444.1 542 46.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 9.8e-121 438.3 467 52.0
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 6.3e-120 435.6 644 42.9
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 5.7e-113 412.5 516 45.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.2e-112 410.6 524 45.8
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.3e-109 401.4 525 44.4
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.6e-109 399.1 577 42.1
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 8.6e-109 398.7 487 46.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.1e-108 398.3 528 44.5
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 2.1e-107 394.0 509 44.4
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.4e-106 391.3 632 39.1
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.0e-106 390.2 551 41.7
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.5e-105 387.9 540 42.4
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.5e-105 387.9 540 42.4
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.7e-104 383.3 520 43.8
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.0e-103 379.0 524 43.9
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 9.2e-103 378.6 582 41.8
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 3.9e-101 373.2 551 40.5
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.6e-100 369.4 530 44.0
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 9.5e-100 368.6 504 42.7
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 6.2e-99 365.9 494 44.1
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.2e-97 361.7 494 43.9
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 7.5e-97 359.0 520 41.3
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.4e-95 352.8 469 41.2
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-93 348.2 515 41.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 6.6e-93 345.9 504 40.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 8.6e-93 345.5 494 41.7
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 8.6e-93 345.5 510 40.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 4.3e-92 343.2 566 38.2
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 4.3e-92 343.2 504 40.5
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 6.4e-88 329.3 508 40.2
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 8.3e-88 328.9 516 38.8
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.1e-87 328.6 510 39.4
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.1e-87 328.6 512 38.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 5.1e-85 319.7 539 38.0
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 5.1e-85 319.7 508 38.4
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 6.6e-85 319.3 514 37.5
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-84 318.5 510 38.2
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.5e-84 318.2 509 38.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 7.3e-84 315.8 552 35.7
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 7.3e-84 315.8 571 37.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 9.5e-84 315.5 541 38.6
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.2e-83 315.1 514 37.2
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 2.4e-82 310.8 513 38.6
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.4e-82 310.8 562 37.0
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 5.2e-82 309.7 565 37.2
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 2.0e-81 307.8 558 37.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.7e-78 297.4 504 37.1
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.7e-78 297.4 531 38.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 6.6e-77 292.7 563 35.7
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.6e-75 287.0 537 37.1
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 6.9e-74 282.7 505 34.7
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.4e-71 274.2 476 37.0
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.0e-70 269.6 522 36.2
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-69 268.9 429 38.5
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 8.7e-69 265.8 512 35.4
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.6e-68 263.1 494 36.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.6e-67 260.4 498 33.5
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 6.2e-67 259.6 298 46.6
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 6.2e-67 259.6 555 33.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.0e-66 256.9 506 35.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.5e-65 255.0 464 35.3
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.6e-65 252.7 473 37.2
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.3e-64 251.9 569 31.6
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.8e-64 250.4 467 36.8
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.4e-63 248.4 446 34.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 7.1e-63 246.1 471 33.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.2e-62 245.4 493 33.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 2.7e-62 244.2 331 41.4
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 6.0e-62 243.0 297 44.1
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 6.0e-62 243.0 527 32.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.9e-62 242.7 507 32.7
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 7.9e-62 242.7 297 44.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 7.9e-62 242.7 538 32.0
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-61 242.3 539 31.2
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.3e-61 241.9 516 32.0
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.8e-61 241.5 506 31.6
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 6.7e-61 239.6 446 34.8
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.1e-60 238.8 272 44.9
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 2.5e-60 237.7 413 35.8
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.5e-60 237.7 507 32.1
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 5.6e-60 236.5 408 36.8
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 9.6e-60 235.7 505 32.7
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.6e-59 235.0 491 32.2
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.6e-59 235.0 510 32.2
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.8e-59 234.2 429 34.7
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.2e-59 233.0 521 30.9
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.2e-59 233.0 521 30.9
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.8e-58 231.5 524 31.1
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.8e-58 231.5 514 30.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.4e-58 231.1 524 31.5
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.3e-58 229.9 524 30.9
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.5e-57 228.4 419 35.3
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 5.8e-57 226.5 500 31.2
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 7.6e-57 226.1 457 32.8
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.7e-56 224.9 402 36.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.7e-56 224.9 417 33.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.8e-56 223.8 409 34.0
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.9e-56 223.4 528 31.2
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 6.4e-56 223.0 468 32.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 8.4e-56 222.6 526 31.4
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.1e-55 222.2 501 31.7
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-55 222.2 518 32.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 2.5e-55 221.1 534 32.0
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 7.1e-55 219.5 529 31.4
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 9.3e-55 219.2 479 32.2
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.6e-54 218.4 441 32.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-54 218.4 499 31.9
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 2.7e-54 217.6 479 32.2
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 7.9e-54 216.1 478 31.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 8.7e-53 212.6 450 31.6
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-52 212.2 518 30.7
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.5e-52 211.8 418 33.0
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.3e-52 210.7 457 34.1
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 9.6e-52 209.1 235 48.1
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 9.6e-52 209.1 509 30.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.1e-50 204.1 484 32.0
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 9.0e-50 202.6 432 31.5
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.6e-49 201.1 537 29.8
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 7.1e-47 193.0 380 33.2
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 1.2e-46 192.2 462 31.8
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 7.9e-46 189.5 302 38.1
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.3e-45 188.7 296 39.2
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 2.5e-44 184.5 286 39.2
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.3e-44 184.1 427 31.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 3.4e-41 174.1 479 31.5
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.0e-40 172.6 463 29.8
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 5.0e-40 170.2 507 29.4
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.9e-39 168.3 436 30.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.9e-39 168.3 513 27.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.9e-39 168.3 429 30.1
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.2e-39 166.4 242 41.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.7e-38 164.5 222 41.9
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 4.6e-38 163.7 522 26.6
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 2.5e-36 157.9 270 40.7
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.7e-35 155.2 214 41.6
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 6.3e-35 153.3 475 27.8
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-34 152.5 472 28.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.4e-34 152.1 471 27.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 2.9e-32 144.4 221 38.5
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 6.5e-32 143.3 508 27.0
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.5e-31 141.4 249 36.1
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.5e-31 141.4 548 27.6
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 4.2e-31 140.6 506 27.7
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.5e-31 140.2 504 27.2
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 6.7e-29 133.3 279 34.8
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 8.8e-29 132.9 161 45.3
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.0e-28 131.7 257 33.5
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 5.7e-28 130.2 161 44.7
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.5e-24 116.7 299 33.4
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.4e-23 115.5 258 31.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.9e-23 115.2 257 35.8
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 7.2e-23 113.2 261 32.6
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.6e-22 110.9 280 28.2
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.1e-20 105.9 407 24.8
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.7e-19 102.1 456 27.6
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 2.2e-16 91.7 117 38.5
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 5.0e-16 90.5 228 33.8
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 1.5e-15 89.0 148 35.8
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.7e-14 84.0 144 37.5
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 6.1e-14 83.6 122 40.2
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.0e-13 82.8 246 32.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.6e-12 78.2 191 29.8
AagrBONN_evm.TU.Sc2ySwM_344.1097 Anthoceros agrestis HOM05D003538 ORTHO05D004376 1.1e-10 72.8 539 22.1
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.4e-10 72.4 142 34.5
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 1.2e-09 69.3 554 19.0


User provided reference genes

Program Settings