Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-152 543.1 299 100.0
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-152 543.1 299 100.0
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.2e-150 536.6 299 98.7
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.6e-132 475.7 299 85.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.5e-116 421.8 301 78.7
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 1.3e-112 410.2 294 77.6
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 2.1e-110 402.9 298 69.8
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 2.8e-110 402.5 302 72.8
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.4e-109 400.2 298 71.8
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 9.9e-108 394.0 298 74.2
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 9.9e-108 394.0 301 69.1
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 6.4e-107 391.3 301 72.1
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.6e-105 386.7 297 70.7
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 7.9e-105 384.4 304 68.8
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.0e-104 384.0 298 73.2
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 3.0e-104 382.5 303 72.6
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 6.7e-104 381.3 301 71.4
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 1.5e-103 380.2 302 68.5
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.9e-103 379.8 297 71.4
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 3.3e-103 379.0 298 67.8
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 4.3e-103 378.6 298 67.1
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.6e-103 378.3 298 69.5
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.3e-102 377.1 301 67.4
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-102 377.1 298 69.5
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-102 377.1 298 69.5
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 1.3e-102 377.1 237 85.2
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-102 376.7 298 69.1
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-102 376.7 298 69.1
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 2.8e-102 375.9 301 68.1
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 1.1e-101 374.0 297 64.0
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 6.9e-101 371.3 304 67.4
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 6.9e-101 371.3 296 64.2
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 6.9e-101 371.3 302 66.9
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 9.0e-101 370.9 299 66.9
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 9.0e-101 370.9 299 66.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 9.0e-101 370.9 302 70.9
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.5e-100 370.2 297 67.7
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 2.6e-100 369.4 293 67.9
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 4.5e-100 368.6 299 65.6
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 5.8e-100 368.2 296 67.9
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 7.6e-100 367.9 296 72.0
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.7e-99 366.7 306 66.7
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 6.5e-99 364.8 299 64.2
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 8.4e-99 364.4 300 68.3
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 8.4e-99 364.4 297 66.0
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.4e-98 363.6 298 66.1
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 2.5e-98 362.8 299 63.5
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 3.2e-98 362.5 299 70.6
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 4.2e-98 362.1 297 64.3
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 7.1e-98 361.3 297 65.3
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.2e-97 360.5 307 63.5
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.2e-97 360.5 296 65.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 1.2e-97 360.5 299 65.6
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.6e-97 360.1 299 65.9
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.6e-97 360.1 296 65.2
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.6e-97 360.1 295 70.5
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 2.1e-97 359.8 296 70.3
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 6.0e-97 358.2 286 64.0
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.0e-96 355.9 298 64.8
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 2.2e-94 349.7 300 65.0
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.4e-93 347.1 301 68.1
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 1.8e-93 346.7 300 66.0
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 6.9e-93 344.7 300 62.0
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.5e-92 343.6 291 58.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.5e-92 342.0 304 63.2
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 5.9e-92 341.7 300 60.3
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.3e-91 340.5 300 66.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 2.2e-91 339.7 298 64.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.9e-91 339.3 295 64.1
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 3.8e-91 339.0 296 67.9
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 5.0e-91 338.6 303 63.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 6.5e-91 338.2 298 66.1
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 2.5e-90 336.3 303 58.4
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 2.5e-90 336.3 302 62.9
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.6e-89 333.6 302 61.6
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 3.6e-89 332.4 274 62.0
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 7.9e-89 331.3 310 62.3
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.0e-88 330.9 305 59.7
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 1.0e-88 330.9 310 61.9
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.3e-88 329.7 299 65.6
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 3.0e-88 329.3 307 63.2
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 3.0e-88 329.3 311 56.9
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.9e-88 328.9 298 64.1
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 6.7e-88 328.2 303 60.4
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 6.7e-88 328.2 304 61.5
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 1.1e-87 327.4 302 60.9
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.5e-87 326.2 306 60.1
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.5e-87 326.2 306 60.1
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.5e-87 326.2 256 66.4
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 3.3e-87 325.9 304 61.2
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 4.3e-87 325.5 297 63.3
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 4.3e-87 325.5 304 62.2
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 5.7e-87 325.1 297 63.3
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 7.4e-87 324.7 304 62.2
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 7.4e-87 324.7 305 61.6
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 7.4e-87 324.7 268 70.1
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 9.7e-87 324.3 283 67.1
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 1.3e-86 323.9 305 61.3
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.7e-86 323.6 300 58.3
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.7e-86 323.6 355 56.6
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 2.8e-86 322.8 309 55.3
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 1.1e-85 320.9 298 62.1
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.7e-83 313.5 300 62.7
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.5e-82 309.7 299 57.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.2e-82 309.3 296 53.7
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 5.5e-82 308.5 292 58.6
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 7.2e-82 308.1 296 53.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 7.9e-81 304.7 243 67.5
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 5.1e-80 302.0 298 53.4
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 8.8e-80 301.2 278 60.1
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 2.0e-79 300.1 297 59.9
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 5.7e-79 298.5 228 75.4
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 7.4e-79 298.1 297 55.2
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 1.3e-78 297.4 298 56.4
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 4.5e-76 288.9 310 47.4
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 5.9e-76 288.5 237 64.6
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.7e-76 288.1 258 62.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.0e-75 287.7 315 55.2
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 2.6e-68 263.1 278 54.7
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.4e-61 240.7 282 56.0
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 3.6e-57 226.1 186 65.1
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 6.1e-57 225.3 310 45.2
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 2.3e-56 223.4 208 55.3
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 2.0e-55 220.3 217 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.3e-51 207.6 192 54.7
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 4.4e-47 192.6 197 46.2
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.4e-40 171.0 279 45.2
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.8e-40 170.6 201 47.3
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.3e-38 164.5 182 44.0
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 5.0e-35 152.5 99 75.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-32 144.4 136 57.4
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.2e-30 137.1 132 62.9
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.2e-30 137.1 132 62.9
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 1.1e-26 124.8 195 40.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 4.4e-23 112.8 68 75.0
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.8e-23 112.5 66 74.2
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 9.9e-23 111.7 198 32.3
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 4.1e-21 106.3 64 81.2
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 7.1e-21 105.5 168 35.7
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.6e-20 104.4 62 82.3
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.8e-16 90.9 75 57.3
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 9.9e-15 85.1 50 78.0
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 9.9e-15 85.1 94 58.5
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.4e-13 80.5 119 45.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.8e-12 75.5 45 71.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.7e-11 74.3 45 71.1
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 1.5e-10 71.2 135 45.2
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 5.6e-10 69.3 39 79.5
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 4.8e-09 66.2 43 69.8
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.4e-07 59.7 53 52.8
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 3.8e-06 56.6 117 42.7


User provided reference genes

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