Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.1e-237 826.2 410 100.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.7e-187 659.4 497 73.0
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.3e-178 628.2 497 68.8
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 6.4e-174 614.4 496 67.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.1e-154 550.4 496 59.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.5e-154 550.1 496 59.3
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.4e-152 542.7 496 58.9
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.4e-152 542.7 496 58.9
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 6.5e-150 534.6 523 56.4
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.9e-149 533.1 413 69.7
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.5e-149 531.6 497 58.4
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.6e-148 528.5 497 57.1
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 6.1e-148 528.1 497 57.1
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 2.5e-146 522.7 496 55.8
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.3e-145 520.4 497 56.7
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 4.8e-145 518.5 496 56.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.1e-144 517.3 497 55.5
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 3.1e-144 515.8 491 56.0
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 9.0e-144 514.2 498 56.2
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 9.0e-144 514.2 497 55.3
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 7.7e-143 511.1 498 55.2
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-142 510.8 501 55.3
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-142 510.4 501 54.9
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.7e-142 510.0 490 56.5
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.2e-142 509.6 490 56.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.2e-142 509.6 498 55.0
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.9e-142 509.2 497 54.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 6.5e-142 508.1 499 55.3
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.1e-141 507.3 497 55.3
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.2e-141 505.8 497 54.7
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 4.2e-141 505.4 514 53.7
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 7.2e-141 504.6 497 56.3
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.6e-140 503.4 490 56.1
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.7e-140 502.7 498 54.4
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.7e-140 502.7 496 56.5
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 7.9e-140 501.1 497 54.5
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 7.9e-140 501.1 489 55.0
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 7.9e-140 501.1 489 55.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 7.9e-140 501.1 497 54.7
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.0e-139 500.7 490 54.1
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 1.0e-139 500.7 497 55.7
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.4e-139 500.4 496 54.4
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 3.0e-139 499.2 490 55.3
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 3.0e-139 499.2 497 54.5
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 3.0e-139 499.2 488 55.3
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 6.7e-139 498.0 497 53.9
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.1e-138 497.3 471 56.3
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.5e-138 496.1 497 55.7
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 3.3e-138 495.7 497 55.5
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 4.3e-138 495.4 497 54.3
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 4.3e-138 495.4 498 54.2
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 4.3e-138 495.4 498 53.2
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 7.4e-138 494.6 495 54.1
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 7.4e-138 494.6 491 53.6
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 9.7e-138 494.2 497 53.9
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.7e-137 493.4 490 54.5
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.2e-137 493.0 497 54.1
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.8e-137 492.7 497 55.3
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 2.8e-137 492.7 493 54.2
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 6.3e-137 491.5 497 54.5
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 8.2e-137 491.1 490 54.3
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.2e-137 491.1 490 53.9
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 1.8e-136 490.0 497 53.7
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 6.9e-136 488.0 487 54.6
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 9.1e-136 487.6 494 53.4
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.2e-135 487.3 490 53.3
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 2.0e-135 486.5 487 54.6
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 2.0e-135 486.5 487 54.0
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 2.6e-135 486.1 490 53.1
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.4e-135 485.7 534 50.2
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 7.7e-135 484.6 487 54.8
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 7.7e-135 484.6 487 53.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 7.7e-135 484.6 487 54.8
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 7.7e-135 484.6 497 51.9
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.0e-134 484.2 490 53.9
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.3e-134 483.8 490 54.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.7e-134 483.4 491 54.2
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.7e-134 483.4 492 52.8
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.9e-134 482.6 491 53.6
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.4e-133 480.3 492 53.9
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.4e-133 480.3 491 54.0
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.9e-133 479.9 428 57.5
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.2e-133 478.8 505 51.5
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.6e-132 476.9 497 53.1
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 2.1e-132 476.5 495 52.3
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 7.9e-132 474.6 511 52.1
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.4e-131 473.8 503 51.3
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 3.9e-131 472.2 499 51.1
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 5.1e-131 471.9 498 52.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 6.7e-131 471.5 490 51.6
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.1e-128 464.2 493 52.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.8e-128 463.4 490 52.4
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 3.1e-128 462.6 511 49.5
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 3.5e-127 459.1 471 52.7
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 7.7e-127 458.0 376 63.3
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.0e-126 457.6 377 63.7
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 2.5e-125 453.0 376 62.5
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.2e-125 452.6 439 54.9
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 4.2e-125 452.2 502 51.0
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.2e-124 450.7 492 50.8
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.7e-124 449.5 490 51.2
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 8.0e-124 448.0 499 50.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 3.9e-123 445.7 536 48.3
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 6.7e-123 444.9 502 49.8
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.4e-120 436.4 466 51.7
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.2e-118 429.9 429 52.9
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 6.5e-118 428.3 488 47.7
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 2.5e-117 426.4 487 47.4
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.5e-117 425.2 413 53.5
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 9.4e-117 424.5 551 45.4
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 6.8e-115 418.3 488 48.0
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.5e-109 400.6 499 47.3
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.9e-109 400.2 314 65.3
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.4e-106 389.4 500 43.4
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.1e-104 384.4 498 43.4
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 9.5e-101 371.3 487 44.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.8e-99 367.1 486 41.2
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.0e-91 341.3 407 48.6
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.3e-89 334.3 272 61.4
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.0e-82 310.5 230 68.3
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 2.3e-75 287.0 302 51.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 3.0e-70 270.0 498 37.6
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.4e-66 256.5 204 70.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 9.9e-66 255.0 381 41.2
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.3e-60 238.0 470 32.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 8.7e-54 215.3 337 40.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.3e-46 191.4 178 52.2
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 4.3e-45 186.4 281 40.6
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 3.5e-39 166.8 291 35.4
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.6e-36 157.9 212 43.4
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.4e-34 150.2 161 46.0
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.3e-33 148.3 179 46.4
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.1e-30 136.3 80 73.8
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.8e-28 130.6 165 47.9
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.7e-25 121.3 152 48.7
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-24 117.1 202 42.6
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.6e-23 114.8 85 75.3
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.0e-22 110.5 179 35.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 6.7e-22 109.4 136 45.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.1e-19 102.1 156 35.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.8e-19 101.3 220 30.9
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 9.4e-16 89.0 85 60.0
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 5.1e-14 83.2 85 57.6
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 3.7e-12 77.0 149 30.9
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 2.9e-09 67.4 86 47.7
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 1.5e-08 65.1 85 47.1
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-07 60.5 70 44.3
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.7e-07 60.1 83 42.2


User provided reference genes

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