Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.2e-30 133.7 64 100.0
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.8e-21 102.8 48 100.0
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.8e-21 102.8 48 100.0
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.8e-21 102.8 48 100.0
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.8e-21 102.8 48 100.0
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.8e-21 102.8 48 100.0
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.8e-21 102.8 48 100.0
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.9e-20 101.3 48 97.9
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 6.4e-20 100.1 48 97.9
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 1.1e-19 99.4 49 93.9
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.4e-19 98.2 48 95.8
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 9.2e-19 96.3 48 93.8
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 2.7e-18 94.7 61 67.2
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 3.9e-17 90.9 56 73.2
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 6.6e-17 90.1 48 83.3
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.5e-16 89.0 48 83.3
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 1.5e-16 89.0 56 71.4
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 1.9e-16 88.6 56 71.4
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 4.3e-16 87.4 49 77.6
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 4.3e-16 87.4 62 66.1
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 5.6e-16 87.0 56 67.9
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 5.6e-16 87.0 58 67.2
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 7.3e-16 86.7 49 79.6
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 7.3e-16 86.7 56 69.6
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 7.3e-16 86.7 62 66.1
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 9.5e-16 86.3 62 64.5
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 9.5e-16 86.3 56 71.4
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 9.5e-16 86.3 62 62.9
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 9.5e-16 86.3 56 67.9
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 9.5e-16 86.3 56 67.9
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 1.2e-15 85.9 62 64.5
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 1.6e-15 85.5 49 75.5
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.6e-15 85.5 56 66.1
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 1.6e-15 85.5 56 67.9
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 1.6e-15 85.5 48 79.2
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 1.6e-15 85.5 56 66.1
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 1.6e-15 85.5 62 64.5
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 1.6e-15 85.5 49 75.5
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 2.1e-15 85.1 56 69.6
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 2.1e-15 85.1 56 66.1
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 2.1e-15 85.1 48 79.2
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 2.1e-15 85.1 56 66.1
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 2.1e-15 85.1 48 79.2
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 2.1e-15 85.1 48 79.2
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 2.8e-15 84.7 56 66.1
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 2.8e-15 84.7 48 79.2
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 2.8e-15 84.7 61 63.9
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 2.8e-15 84.7 48 77.1
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 2.8e-15 84.7 48 77.1
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 2.8e-15 84.7 48 79.2
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 2.8e-15 84.7 48 79.2
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 3.6e-15 84.3 62 62.9
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 3.6e-15 84.3 62 62.9
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 4.7e-15 84.0 56 67.9
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 4.7e-15 84.0 56 67.9
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 4.7e-15 84.0 56 67.9
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 4.7e-15 84.0 56 67.9
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 4.7e-15 84.0 48 77.1
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 4.7e-15 84.0 48 77.1
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 4.7e-15 84.0 48 75.0
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 6.2e-15 83.6 56 64.3
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 6.2e-15 83.6 48 75.0
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.2e-15 83.6 48 75.0
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 6.2e-15 83.6 62 61.3
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 6.2e-15 83.6 56 64.3
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 6.2e-15 83.6 56 66.1
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 8.0e-15 83.2 48 75.0
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 8.0e-15 83.2 56 66.1
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 8.0e-15 83.2 48 75.0
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 1.0e-14 82.8 56 64.3
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.0e-14 82.8 61 65.6
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 1.0e-14 82.8 61 65.6
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 1.0e-14 82.8 56 64.3
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 1.0e-14 82.8 48 75.0
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.0e-14 82.8 48 75.0
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 1.0e-14 82.8 47 74.5
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 1.4e-14 82.4 56 67.9
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 1.4e-14 82.4 48 72.9
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 1.4e-14 82.4 47 74.5
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 2.3e-14 81.6 56 64.3
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 2.3e-14 81.6 48 72.9
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 2.3e-14 81.6 56 66.1
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 3.1e-14 81.3 56 66.1
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 3.1e-14 81.3 56 64.3
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 3.1e-14 81.3 48 72.9
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 4.0e-14 80.9 56 64.3
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 4.0e-14 80.9 48 70.8
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 4.0e-14 80.9 48 70.8
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 5.2e-14 80.5 49 69.4
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 5.2e-14 80.5 47 74.5
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 5.2e-14 80.5 48 77.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 5.2e-14 80.5 48 70.8
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 5.2e-14 80.5 48 72.9
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 6.8e-14 80.1 48 70.8
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 8.9e-14 79.7 48 70.8
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 8.9e-14 79.7 48 72.9
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 8.9e-14 79.7 61 62.3
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 1.2e-13 79.3 48 70.8
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 2.6e-13 78.2 48 70.8
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 3.4e-13 77.8 56 57.1
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 4.4e-13 77.4 48 72.9
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 7.5e-13 76.6 47 70.2
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 2.2e-12 75.1 49 67.3
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 2.9e-12 74.7 56 60.7
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 1.1e-11 72.8 49 65.3
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.9e-11 72.0 46 69.6
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.9e-11 72.0 46 69.6
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 3.2e-11 71.2 56 57.1
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 3.2e-11 71.2 49 61.2
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 5.4e-11 70.5 48 64.6
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 5.4e-11 70.5 49 63.3
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 5.4e-11 70.5 48 70.8
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 2.0e-10 68.6 48 62.5
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 3.5e-10 67.8 56 51.8
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 4.6e-10 67.4 48 62.5
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 1.7e-09 65.5 36 75.0
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 2.3e-09 65.1 54 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 3.9e-09 64.3 46 56.5
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 8.6e-09 63.2 42 61.9
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.1e-08 62.8 47 55.3
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 4.3e-08 60.8 36 75.0
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 2.1e-07 58.5 44 54.5


User provided reference genes

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