Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 7.1e-41 171.0 156 100.0
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 7.1e-41 171.0 156 100.0
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.3e-36 154.8 156 85.3
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.7e-13 80.1 54 64.8
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.7e-13 80.1 52 71.2
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.2e-13 79.7 54 66.7
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.1e-12 77.4 51 70.6
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.4e-12 77.0 55 60.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.8e-12 76.6 54 61.1
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.4e-12 76.3 53 67.9
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.1e-12 75.9 53 67.9
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 3.1e-12 75.9 53 67.9
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 4.1e-12 75.5 55 65.5
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 5.3e-12 75.1 53 67.9
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 7.0e-12 74.7 57 56.1
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 7.0e-12 74.7 53 67.9
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 9.1e-12 74.3 52 63.5
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.2e-11 73.9 49 67.3
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.2e-11 73.9 49 67.3
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.6e-11 73.6 48 72.9
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 2.0e-11 73.2 52 63.5
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.6e-11 72.8 54 61.1
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 2.6e-11 72.8 51 64.7
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 2.6e-11 72.8 51 64.7
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 2.6e-11 72.8 52 61.5
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 3.5e-11 72.4 52 63.5
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 3.5e-11 72.4 52 63.5
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 4.5e-11 72.0 48 66.7
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 4.5e-11 72.0 53 62.3
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 4.5e-11 72.0 54 61.1
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 4.5e-11 72.0 54 55.6
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 4.5e-11 72.0 51 60.8
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 4.5e-11 72.0 51 60.8
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 4.5e-11 72.0 51 60.8
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 5.9e-11 71.6 54 61.1
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 5.9e-11 71.6 54 63.0
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 7.7e-11 71.2 54 59.3
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 7.7e-11 71.2 54 61.1
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.0e-10 70.9 48 68.8
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.0e-10 70.9 51 60.8
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 1.7e-10 70.1 49 63.3
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.7e-10 70.1 54 59.3
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.2e-10 69.7 57 52.6
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 2.2e-10 69.7 51 56.9
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 3.8e-10 68.9 54 59.3
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 3.8e-10 68.9 54 55.6
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 3.8e-10 68.9 51 64.7
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 5.0e-10 68.6 49 61.2
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 5.0e-10 68.6 49 61.2
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 5.0e-10 68.6 49 61.2
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 5.0e-10 68.6 48 64.6
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 6.5e-10 68.2 49 65.3
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 8.5e-10 67.8 49 65.3
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.1e-09 67.4 49 61.2
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 1.1e-09 67.4 45 66.7
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 1.5e-09 67.0 135 67.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.5e-09 67.0 53 62.3
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.5e-09 67.0 52 57.7
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.9e-09 66.6 46 67.4
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.9e-09 66.6 47 68.1
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 68.1
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 68.1
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 68.1
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 68.1
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 68.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 2.5e-09 66.2 49 61.2
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 2.5e-09 66.2 49 61.2
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 2.5e-09 66.2 49 59.2
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 2.5e-09 66.2 55 50.9
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 2.5e-09 66.2 55 50.9
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 2.5e-09 66.2 50 62.0
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 66.0
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.5e-09 66.2 47 63.8
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 3.2e-09 65.9 44 59.1
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 4.2e-09 65.5 45 57.8
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 4.2e-09 65.5 45 57.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 4.2e-09 65.5 52 57.7
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 4.2e-09 65.5 52 57.7
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 5.5e-09 65.1 49 53.1
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 5.5e-09 65.1 48 66.7
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 5.5e-09 65.1 52 53.8
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 5.5e-09 65.1 52 53.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.5e-09 65.1 49 59.2
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 7.2e-09 64.7 44 68.2
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 7.2e-09 64.7 44 68.2
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 7.2e-09 64.7 45 55.6
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 7.2e-09 64.7 52 57.7
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.2e-08 63.9 52 51.9
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.6e-08 63.5 46 60.9
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 1.6e-08 63.5 48 58.3
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.6e-08 63.5 46 65.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 2.1e-08 63.2 47 66.0
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.1e-08 63.2 48 62.5
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 2.7e-08 62.8 46 65.2
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 2.7e-08 62.8 46 65.2
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 2.7e-08 62.8 50 60.0
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 2.7e-08 62.8 54 46.3
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.6e-08 62.4 47 59.6
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 3.6e-08 62.4 44 68.2
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 3.6e-08 62.4 45 62.2
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 4.7e-08 62.0 47 66.0
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 8.0e-08 61.2 46 63.0
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 8.0e-08 61.2 45 66.7
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 8.0e-08 61.2 46 63.0
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.0e-07 60.8 47 59.6
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.0e-07 60.8 46 63.0
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.0e-07 60.8 45 60.0
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.4e-07 60.5 48 56.2
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.4e-07 60.5 48 60.4
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 1.8e-07 60.1 47 57.4
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 1.8e-07 60.1 52 50.0
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.3e-07 59.7 44 61.4
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.0e-07 59.3 40 67.5
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 6.7e-07 58.2 55 58.2
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 6.7e-07 58.2 47 53.2
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.8e-07 57.8 40 67.5
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.6e-06 56.2 37 62.2
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.3e-06 55.8 37 59.5
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 4.4e-06 55.5 38 60.5
SEGI_27242 Sequoiadendron giganteum HOM05D002986 ORTHO05D007611 7.5e-06 54.7 47 51.1


User provided reference genes

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