Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G035400 Cucumis sativus L. HOM05D008072 ORTHO05D010204 2.7e-50 201.8 111 100.0
MELO3C024449.2 Cucumis melo HOM05D008072 ORTHO05D010204 3.2e-35 151.8 113 78.8
ClCG09G000070 Citrullus lanatus HOM05D008072 ORTHO05D010204 7.4e-32 140.6 115 66.1
Sed0011388 Sechium edule HOM05D008072 ORTHO05D010204 4.2e-27 124.8 111 63.1
Manes.04G132700 Manihot esculenta HOM05D008072 ORTHO05D010204 3.1e-14 82.0 116 46.6
Atru.chr1.3499 Acer truncatum HOM05D008072 ORTHO05D010204 6.9e-14 80.9 121 43.8
Cc04_g02690 Coffea canephora HOM05D008072 ORTHO05D010204 1.2e-13 80.1 117 45.3
TAR626G1017 Trochodendron aralioides HOM05D008072 ORTHO05D010204 1.2e-13 80.1 111 45.0
Cpa.g.c31416 Carica papaya HOM05D008072 ORTHO05D010204 2.0e-13 79.3 107 43.0
Thecc.06G097600 Theobroma cacao HOM05D008072 ORTHO05D010204 7.6e-13 77.4 108 46.3
Hma1.2p1_3269F.1_g334750 Hydrangea macrophylla HOM05D008072 ORTHO05D010204 1.0e-12 77.0 115 47.0
Oeu060494.1 Olea europaea HOM05D008072 ORTHO05D010204 1.0e-12 77.0 111 43.2
Potri.001G188400 Populus trichocarpa HOM05D008072 ORTHO05D010204 2.2e-12 75.9 113 44.2
Dinv37992 Davidia involucrata HOM05D008072 ORTHO05D010204 5.0e-12 74.7 112 45.5
Sabra01G0152600 Salix brachista HOM05D008072 ORTHO05D010204 8.5e-12 73.9 112 43.8
Actinidia09003 Actinidia chinensis HOM05D008072 ORTHO05D010204 1.9e-11 72.8 116 42.2
Aqoxy7G01464 Aquilegia oxysepala HOM05D008072 ORTHO05D010204 1.9e-11 72.8 111 36.9
Peaxi162Scf00038g00843 Petunia axillaris HOM05D008072 ORTHO05D010204 2.5e-11 72.4 113 43.4
GSVIVG01017012001 Vitis vinifera HOM05D008072 ORTHO05D010204 2.5e-11 72.4 116 51.7
PGSC0003DMG400002533 Solanum tuberosum HOM05D008072 ORTHO05D010204 3.2e-11 72.0 113 39.8
MD17G1186400 Malus domestica HOM05D008072 ORTHO05D010204 4.2e-11 71.6 121 40.5
PGR102G0255 Punica granatum HOM05D008072 ORTHO05D010204 4.2e-11 71.6 117 40.2
FAN05G4246 Fragaria x ananassa HOM05D008072 ORTHO05D010204 5.5e-11 71.2 115 47.0
FAN02G2294 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.2e-10 70.1 115 46.1
FvH4_6g32180 Fragaria vesca HOM05D008072 ORTHO05D010204 1.6e-10 69.7 115 46.1
FAN09G3706 Fragaria x ananassa HOM05D008072 ORTHO05D010204 1.6e-10 69.7 115 46.1
QL05p020523 Quercus lobata HOM05D008072 ORTHO05D010204 1.6e-10 69.7 106 43.4
TWI18G1284 Tripterygium wilfordii HOM05D008072 ORTHO05D010204 1.6e-10 69.7 116 37.9
FAN14G4057 Fragaria x ananassa HOM05D008072 ORTHO05D010204 2.7e-10 68.9 116 45.7
Haze_15831 Corylus avellana HOM05D008072 ORTHO05D010204 3.6e-10 68.6 44 68.2
Prupe.3G061100 Prunus persica HOM05D008072 ORTHO05D010204 4.6e-10 68.2 110 41.8
RcHm_v2.0_Chr2g0140071 Rosa chinensis HOM05D008072 ORTHO05D010204 7.9e-10 67.4 119 41.2
CSS0040470 Camellia sinensis var. sinensis HOM05D008072 ORTHO05D010204 1.0e-09 67.0 116 39.7
Ciclev10026797m.g Citrus clementina HOM05D008072 ORTHO05D010204 1.4e-09 66.6 117 39.3
Lj3g0001751 Lotus japonicus HOM05D008072 ORTHO05D010204 1.4e-09 66.6 109 43.1
Sopen03g039710 Solanum pennellii HOM05D008072 ORTHO05D010204 2.3e-09 65.9 125 37.6
Duzib192G0771 Durio zibethinus HOM05D008072 ORTHO05D010204 3.0e-09 65.5 119 36.1
Glyma.07G016900 Glycine max HOM05D008072 ORTHO05D010204 3.0e-09 65.5 108 40.7
Nn2g11609 Nelumbo nucifera HOM05D008072 ORTHO05D010204 3.9e-09 65.1 109 37.6
Glyma.08G202200 Glycine max HOM05D008072 ORTHO05D010204 5.1e-09 64.7 107 41.1
MD09G1205700 Malus domestica HOM05D008072 ORTHO05D010204 5.1e-09 64.7 116 37.9
Rhsim12G0202400 Rhododendron simsii HOM05D008072 ORTHO05D010204 6.7e-09 64.3 116 42.2
Lalb_Chr04g0262911 Lupinus albus HOM05D008072 ORTHO05D010204 8.8e-09 63.9 107 37.4
VMungo0331G2041 Vigna mungo HOM05D008072 ORTHO05D010204 8.8e-09 63.9 111 41.4
Gohir.D03G059100 Gossypium hirsutum HOM05D008072 ORTHO05D010204 2.5e-08 62.4 43 65.1
Gorai.003G063000 Gossypium raimondii HOM05D008072 ORTHO05D010204 2.5e-08 62.4 43 65.1
Nn8g39117 Nelumbo nucifera HOM05D008072 ORTHO05D010204 2.5e-08 62.4 105 36.2
Phvul.010G146400 Phaseolus vulgaris HOM05D008072 ORTHO05D010204 2.5e-08 62.4 111 40.5
TPR.G35014 Trifolium pratense HOM05D008072 ORTHO05D010204 4.3e-08 61.6 117 40.2
Nitab4.5_0001755g0100 Nicotiana tabacum HOM05D008072 ORTHO05D010204 5.7e-08 61.2 43 62.8
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 7.4e-08 60.8 108 39.8
SalBow7G3462 Salvia bowleyana HOM05D008072 ORTHO05D010204 9.7e-08 60.5 112 36.6
Psat4g197480 Pisum sativum HOM05D008072 ORTHO05D010204 1.3e-07 60.1 110 39.1
Gohir.A02G118500 Gossypium hirsutum HOM05D008072 ORTHO05D010204 1.7e-07 59.7 43 62.8
Medtr8g013930 Medicago truncatula HOM05D008072 ORTHO05D010204 6.3e-07 57.8 108 36.1
SGA_v2.0_scaffold4G02017 Striga asiatica HOM05D008072 ORTHO05D010204 6.3e-07 57.8 117 35.9
HanXRQChr16g0501221 Helianthus annuus HOM05D008072 ORTHO05D010204 8.2e-07 57.4 108 37.0
arahy.Tifrunner.gnm1.ann1.XD1M86 Arachis hypogaea HOM05D008072 ORTHO05D010204 1.1e-06 57.0 104 40.4
arahy.Tifrunner.gnm1.ann1.UX9EW1 Arachis hypogaea HOM05D008072 ORTHO05D010204 1.8e-06 56.2 104 41.3
CiPaw.02G146800 Carya illinoinensis HOM05D008072 ORTHO05D010204 1.8e-06 56.2 54 53.7
MBI01_g42894_MAGBIO Magnolia biondii HOM05D008072 ORTHO05D010204 9.1e-06 53.9 108 35.2


User provided reference genes

Program Settings