Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 2229.1 1148 100.0
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 2024.6 1107 93.9
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1884.4 1148 84.0
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 0.0e+00 1582.0 924 88.3
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1284.6 1164 58.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1279.2 1163 57.8
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1276.5 1164 58.5
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1265.0 1234 55.8
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1251.5 1167 58.4
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1234.2 1163 57.3
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1233.0 1148 57.4
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1232.2 1163 57.3
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1229.5 1165 56.6
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1218.8 1155 57.0
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1217.2 1163 56.5
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1212.6 1157 57.0
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1212.6 1161 56.3
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1212.2 1152 56.1
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1198.0 1166 56.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1191.4 1160 54.8
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1185.2 1155 55.6
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1183.7 1163 53.9
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1181.4 1155 55.2
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1167.9 1155 54.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1151.0 1147 53.9
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1139.8 1148 53.7
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1156 53.6
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1132.1 1155 53.2
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1120.9 1156 52.4
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1119.0 1102 55.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1109.0 1217 50.8
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1107.0 1159 52.0
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1103.2 1146 52.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1094.7 1131 52.3
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1094.3 1161 51.2
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1158 51.6
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1086.6 1161 52.0
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1085.5 1166 51.4
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1083.2 1146 50.8
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1078.2 1155 52.1
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 7.9e-312 1074.7 1152 50.4
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.6e-311 1072.8 1148 51.0
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.6e-310 1069.7 1148 51.1
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 8.6e-309 1063.9 1159 50.6
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 2.1e-307 1059.3 1165 49.0
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 8.0e-307 1057.4 1155 51.2
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 4.4e-305 1051.6 1238 48.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.1e-303 1047.0 1155 49.2
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 1.1e-303 1047.0 1153 50.9
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 1.9e-303 1046.2 1155 50.1
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 3.9e-301 1038.5 1162 50.2
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.9e-300 1036.2 1153 48.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 3.3e-300 1035.4 1156 49.7
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 2.1e-299 1032.7 1150 49.8
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.2e-297 1026.9 1071 51.6
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 7.5e-297 1024.2 1153 48.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 4.6e-294 1015.0 1162 49.4
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 1.1e-292 1010.4 1106 49.5
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.1e-290 1003.8 1157 48.0
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 4.6e-286 988.4 1162 47.7
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 5.1e-285 984.9 1162 46.7
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 4.3e-284 981.9 1159 46.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 8.9e-282 974.2 1162 46.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 4.4e-281 971.8 1163 46.3
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 5.8e-281 971.5 1136 47.2
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 9.2e-279 964.1 1145 47.1
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 8.7e-277 957.6 1156 46.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.6e-275 953.4 1162 46.4
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.1e-275 953.0 1157 46.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 2.8e-275 952.6 1157 46.3
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 3.6e-275 952.2 1141 47.1
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 6.2e-275 951.4 1102 49.0
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 8.1e-275 951.0 1150 46.1
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.1e-274 950.7 1160 46.3
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.4e-274 950.3 1157 46.8
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 9.9e-273 944.1 1148 46.0
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.1e-271 940.6 1009 50.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 5.4e-271 938.3 1176 45.7
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.6e-270 936.8 1049 50.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.1e-268 930.6 1135 47.0
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 3.1e-266 922.5 1032 49.8
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.2e-265 920.6 1164 45.4
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 5.4e-263 911.8 1104 47.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 3.7e-259 899.0 1074 47.7
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.1e-255 884.8 1135 45.7
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.5e-249 865.5 1151 44.0
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 2.2e-248 863.2 1145 43.9
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.9e-244 850.1 963 48.4
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 1.1e-236 824.3 1076 44.1
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.7e-235 820.5 1135 43.9
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.9e-234 815.1 1159 41.0
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 7.9e-230 801.6 1153 40.7
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 5.7e-228 795.4 1144 42.6
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 4.4e-212 742.7 915 46.1
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.1e-162 578.6 1049 36.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 3.9e-152 543.5 1211 33.1
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.5e-135 488.4 1183 30.8
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 6.3e-134 483.0 642 43.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.1e-127 462.2 744 39.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.5e-127 461.1 455 57.6
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 2.5e-119 434.5 232 94.4
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.2e-114 416.4 526 44.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.1e-109 402.5 521 44.7
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.7e-107 395.2 337 58.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 3.8e-107 394.0 1138 28.0
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.0e-107 393.7 436 50.0
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.7e-102 377.5 450 48.0
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.6e-92 345.5 449 45.7
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.3e-75 288.5 232 62.5
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 3.6e-73 281.2 1306 24.9
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.6e-65 254.6 197 65.5
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 2.0e-63 248.8 315 48.3
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 8.3e-62 243.4 154 74.0
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.0e-56 224.6 324 43.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 6.8e-56 223.8 180 62.8
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 2.9e-54 218.4 262 49.6
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-44 185.7 226 44.2
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.0e-44 184.1 194 53.6
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.4e-37 162.9 159 50.3
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.1e-33 149.1 119 64.7
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 2.2e-30 139.0 172 44.8
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 4.9e-30 137.9 132 56.1
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.2e-28 133.3 180 45.0
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 3.5e-28 131.7 123 53.7
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.0e-28 131.0 123 52.8
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 3.9e-27 128.3 102 66.7
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 8.7e-27 127.1 147 48.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 8.7e-27 127.1 147 48.3
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 7.4e-26 124.0 119 52.1
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 9.6e-26 123.6 357 27.2
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 6.2e-25 120.9 282 31.6
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-24 119.4 96 66.7
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-24 119.4 96 66.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.1e-24 118.6 177 37.9
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.1e-18 100.1 75 64.0
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.9e-18 99.4 93 54.8
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.5e-18 99.0 122 45.1
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 7.4e-18 97.4 63 57.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.4e-16 93.2 55 81.8
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 1.0e-14 87.0 127 41.7
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.2e-14 85.9 92 46.7
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.4e-13 83.2 155 32.9
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.4e-13 83.2 88 46.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 7.2e-13 80.9 62 62.9
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 3.6e-12 78.6 73 56.2
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.6e-09 69.7 64 54.7
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 4.8e-09 68.2 68 51.5
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 4.8e-09 68.2 80 48.8
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 9.1e-08 63.9 87 47.1
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 7.7e-07 60.8 48 56.2


User provided reference genes

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