Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 8.5e-34 146.7 92 100.0
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.6e-30 135.2 93 93.5
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.5e-25 117.5 93 87.1
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.7e-24 114.4 92 81.5
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 4.5e-19 97.8 92 58.7
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.2e-18 95.5 91 70.3
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.5e-17 92.8 86 74.4
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.5e-17 92.8 83 79.5
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.9e-17 92.4 82 79.3
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 7.2e-17 90.5 92 69.6
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 9.5e-17 90.1 88 71.6
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 9.5e-17 90.1 78 76.9
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.2e-16 89.7 90 72.2
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.6e-16 88.2 86 72.1
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 4.7e-16 87.8 91 71.4
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.7e-16 87.8 79 73.4
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 6.1e-16 87.4 90 71.1
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.0e-15 86.7 88 69.3
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.0e-15 86.7 90 71.1
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.0e-15 86.7 89 70.8
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.8e-15 85.9 85 72.9
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 3.0e-15 85.1 88 68.2
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.0e-15 84.7 88 69.3
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.0e-15 84.7 88 69.3
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 5.2e-15 84.3 77 76.6
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 5.2e-15 84.3 88 69.3
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.8e-15 84.0 86 72.1
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 8.8e-15 83.6 88 69.3
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 8.8e-15 83.6 75 76.0
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.2e-14 83.2 92 66.3
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 1.2e-14 83.2 91 64.8
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.5e-14 82.8 87 71.3
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 2.0e-14 82.4 81 72.8
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.0e-14 82.4 92 68.5
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 2.6e-14 82.0 88 70.5
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 4.4e-14 81.3 88 69.3
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.7e-14 80.9 78 74.4
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 7.5e-14 80.5 91 63.7
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 7.5e-14 80.5 91 65.9
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 9.8e-14 80.1 77 77.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 9.8e-14 80.1 80 70.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-13 79.7 88 69.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.3e-13 79.7 88 69.3
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-13 79.7 72 76.4
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.7e-13 79.3 83 71.1
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.7e-13 79.3 78 73.1
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.9e-13 77.8 81 72.8
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 8.3e-13 77.0 79 70.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.3e-13 77.0 89 62.9
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 8.3e-13 77.0 80 65.0
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 8.3e-13 77.0 88 65.9
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-12 76.3 88 68.2
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.8e-12 75.9 88 68.2
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.8e-12 75.9 88 68.2
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.8e-12 75.9 80 67.5
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.4e-12 75.5 85 49.4
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-12 75.5 93 63.4
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 3.1e-12 75.1 88 64.8
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.1e-12 74.7 91 64.8
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.4e-12 74.3 85 51.8
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 5.4e-12 74.3 90 58.9
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 7.0e-12 73.9 87 64.4
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 7.0e-12 73.9 91 61.5
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 7.0e-12 73.9 91 62.6
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 7.0e-12 73.9 91 61.5
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 9.2e-12 73.6 89 64.0
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 9.2e-12 73.6 80 68.8
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.6e-11 72.8 80 70.0
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.6e-11 72.8 93 63.4
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 1.6e-11 72.8 88 65.9
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.7e-11 72.0 90 48.9
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.5e-11 71.6 89 62.9
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.5e-11 71.2 50 70.0
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 4.5e-11 71.2 47 68.1
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.5e-11 71.2 76 48.7
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 4.5e-11 71.2 91 63.7
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.8e-11 70.5 86 60.5
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.0e-10 70.1 75 70.7
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.3e-10 69.7 75 64.0
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.3e-10 69.7 97 59.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-10 69.3 89 60.7
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.7e-10 69.3 78 66.7
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.3e-10 68.9 82 68.3
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.3e-10 68.9 91 58.2
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.3e-10 68.9 91 45.1
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.9e-10 68.6 89 62.9
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.9e-10 68.6 51 60.8
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.9e-10 68.6 80 65.0
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 2.9e-10 68.6 72 72.2
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 5.0e-10 67.8 87 47.1
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 5.0e-10 67.8 48 64.6
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 5.0e-10 67.8 74 68.9
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 8.6e-10 67.0 75 66.7
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 8.6e-10 67.0 75 65.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 8.6e-10 67.0 79 44.3
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 1.1e-09 66.6 80 65.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.1e-09 66.6 89 60.7
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 66.6 89 60.7
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-09 66.6 89 57.3
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.1e-09 66.6 76 65.8
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.5e-09 66.2 79 64.6
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 1.9e-09 65.9 88 46.6
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.9e-09 65.9 74 68.9
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.9e-09 65.9 81 64.2
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.9e-09 65.9 72 70.8
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.5e-09 65.5 79 68.4
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.3e-09 65.1 91 57.1
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.6e-09 64.3 65 47.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 5.6e-09 64.3 85 44.7
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 7.3e-09 63.9 79 46.8
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.2e-08 63.2 89 58.4
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.6e-08 62.8 92 59.8
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.6e-08 62.8 76 40.8
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.1e-08 62.4 79 62.0
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.1e-08 62.4 78 66.7
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.8e-08 62.0 86 43.0
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.8e-08 62.0 93 54.8
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 3.6e-08 61.6 46 67.4
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.6e-08 61.6 83 45.8
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 4.7e-08 61.2 85 57.6
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 6.1e-08 60.8 79 62.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 6.1e-08 60.8 70 48.6
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 8.0e-08 60.5 88 36.4
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 8.0e-08 60.5 79 40.5
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 8.0e-08 60.5 86 46.5
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.4e-07 59.7 78 62.8
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.4e-07 59.7 72 68.1
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-07 58.9 60 50.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 2.3e-07 58.9 60 50.0
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 3.0e-07 58.5 87 60.9
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 3.0e-07 58.5 49 63.3
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.0e-07 58.5 40 67.5
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.0e-07 58.5 59 54.2
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 4.0e-07 58.2 77 66.2
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.0e-07 58.2 88 40.9
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 4.0e-07 58.2 54 55.6
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 5.2e-07 57.8 63 50.8
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 6.8e-07 57.4 60 48.3
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 8.9e-07 57.0 124 33.9
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.2e-06 56.6 122 43.4
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-06 55.8 58 51.7
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 2.6e-06 55.5 58 53.4
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.4e-06 55.1 115 34.8
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 4.4e-06 54.7 122 40.2
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.4e-06 54.7 96 36.5
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 4.4e-06 54.7 58 51.7
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-06 54.7 58 51.7
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-06 54.7 58 51.7
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.4e-06 54.7 136 30.1
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 5.7e-06 54.3 87 41.4
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 5.7e-06 54.3 92 38.0
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 7.5e-06 53.9 121 30.6
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 7.5e-06 53.9 121 30.6
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 7.5e-06 53.9 65 44.6


User provided reference genes

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