Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.0e-57 226.5 109 100.0
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 2.0e-50 202.2 109 87.2
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 4.1e-43 177.9 115 77.4
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 1.3e-33 146.4 113 68.1
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 2.8e-28 128.6 104 64.4
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 7.8e-18 94.0 109 51.4
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 1.3e-17 93.2 113 45.1
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 8.6e-17 90.5 117 45.3
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 2.5e-16 89.0 108 50.9
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 4.3e-16 88.2 86 55.8
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 9.5e-16 87.0 76 61.8
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 9.5e-16 87.0 107 46.7
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.2e-15 86.7 103 47.6
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 2.1e-15 85.9 94 53.2
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 2.1e-15 85.9 86 57.0
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 3.6e-15 85.1 64 67.2
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.0e-14 83.6 111 45.0
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.4e-14 83.2 111 45.0
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 5.2e-14 81.3 110 43.6
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 6.8e-14 80.9 84 57.1
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 8.9e-14 80.5 83 53.0
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 8.9e-14 80.5 83 53.0
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 8.9e-14 80.5 83 53.0
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 1.2e-13 80.1 75 58.7
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 2.0e-13 79.3 113 44.2
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 2.6e-13 79.0 75 57.3
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 4.4e-13 78.2 116 46.6
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 4.4e-13 78.2 103 41.7
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 4.4e-13 78.2 68 63.2
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 4.4e-13 78.2 115 41.7
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 5.8e-13 77.8 98 53.1
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 7.5e-13 77.4 91 53.8
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 7.5e-13 77.4 116 44.0
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 7.5e-13 77.4 76 59.2
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 7.5e-13 77.4 78 56.4
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.3e-12 76.6 119 42.0
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.3e-12 76.6 109 44.0
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 1.3e-12 76.6 74 54.1
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.3e-12 76.6 119 45.4
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 1.7e-12 76.3 95 49.5
THA.LOC104822669 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 1.7e-12 76.3 87 50.6
Aa31LG10G1360 Aethionema arabicum HOM05D000815 ORTHO05D000636 2.2e-12 75.9 89 53.9
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 2.9e-12 75.5 87 49.4
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 2.9e-12 75.5 67 61.2
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 3.7e-12 75.1 119 41.2
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 3.7e-12 75.1 80 53.8
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 4.9e-12 74.7 105 41.9
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 6.4e-12 74.3 84 48.8
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 8.3e-12 73.9 84 50.0
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 1.1e-11 73.6 91 50.5
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 1.1e-11 73.6 74 56.8
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.4e-11 73.2 91 51.6
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.4e-11 72.4 74 52.7
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.4e-11 72.4 121 41.3
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 2.4e-11 72.4 120 41.7
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.1e-11 71.6 74 52.7
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 5.4e-11 71.2 55 58.2
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 5.4e-11 71.2 120 41.7
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 7.0e-11 70.9 112 40.2
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 7.0e-11 70.9 71 53.5
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 7.0e-11 70.9 73 52.1
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 1.2e-10 70.1 52 63.5
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 1.6e-10 69.7 53 64.2
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.6e-10 69.7 52 67.3
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 1.6e-10 69.7 52 67.3
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 1.6e-10 69.7 55 58.2
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 1.6e-10 69.7 55 61.8
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 6.0e-10 67.8 116 35.3
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 7.8e-10 67.4 82 47.6
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 7.8e-10 67.4 83 44.6
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 1.0e-09 67.0 66 62.1
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 1.0e-09 67.0 55 61.8
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.7e-09 66.2 96 43.8
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 1.7e-09 66.2 52 63.5
BcaC08g44159 Brassica carinata HOM05D002144 ORTHO05D002170 2.3e-09 65.9 82 45.1
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 3.0e-09 65.5 115 40.0
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 5.0e-09 64.7 65 56.9
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 5.0e-09 64.7 57 64.9
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 6.6e-09 64.3 110 40.9
C06p15600 Brassica napus HOM05D002144 ORTHO05D002170 6.6e-09 64.3 82 45.1
BolC6t36748H Brassica oleracea HOM05D002144 ORTHO05D002170 6.6e-09 64.3 82 45.1
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 6.6e-09 64.3 52 59.6
Aa31LG8G1430 Aethionema arabicum HOM05D002144 ORTHO05D002170 8.6e-09 63.9 83 45.8
A05p17730 Brassica napus HOM05D002144 ORTHO05D002170 8.6e-09 63.9 82 43.9
BraA05t20665Z Brassica rapa HOM05D002144 ORTHO05D002170 8.6e-09 63.9 82 43.9
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 1.1e-08 63.5 64 54.7
Sp1g40510 Schrenkiella parvula HOM05D001069 ORTHO05D002170 1.1e-08 63.5 91 47.3
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.5e-08 63.2 53 58.5
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 1.5e-08 63.2 55 58.2
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 1.9e-08 62.8 81 44.4
BcaB02g10863 Brassica carinata HOM05D002144 ORTHO05D002170 2.5e-08 62.4 86 44.2
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.5e-08 62.4 110 38.2
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 2.5e-08 62.4 89 43.8
AL3G26430 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 3.3e-08 62.0 82 46.3
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 4.3e-08 61.6 81 43.2
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 5.6e-08 61.2 61 54.1
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 5.6e-08 61.2 67 47.8
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 5.6e-08 61.2 67 49.3
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 7.3e-08 60.8 34 76.5
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.2e-07 60.1 95 42.1
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 1.2e-07 60.1 100 37.0
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 1.6e-07 59.7 61 52.5
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 1.6e-07 59.7 43 67.4
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 1.6e-07 59.7 67 47.8
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 1.6e-07 59.7 67 47.8
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 2.8e-07 58.9 69 46.4
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 3.6e-07 58.5 39 66.7
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 3.6e-07 58.5 104 31.7
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 3.6e-07 58.5 82 43.9
Sp3g12440 Schrenkiella parvula HOM05D002144 ORTHO05D002170 3.6e-07 58.5 82 42.7
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 6.2e-07 57.8 43 65.1
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 8.0e-07 57.4 64 51.6
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 1.1e-06 57.0 54 53.7
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 1.4e-06 56.6 109 38.5
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 1.4e-06 56.6 109 38.5
CDE06G1752 Ceratophyllum demersum HOM05D002144 ORTHO05D002170 1.4e-06 56.6 84 36.9
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.4e-06 56.6 61 45.9
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 1.4e-06 56.6 115 36.5
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 1.8e-06 56.2 92 41.3
C05p53460 Brassica napus HOM05D002144 ORTHO05D002170 1.8e-06 56.2 88 44.3
BolC1t04997H Brassica oleracea HOM05D002144 ORTHO05D002170 1.8e-06 56.2 111 35.1
BolC5t34023H Brassica oleracea HOM05D002144 ORTHO05D002170 1.8e-06 56.2 88 44.3
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 1.8e-06 56.2 92 41.3
ClCG03G017140 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.3e-06 55.8 85 41.2
DCAR_003365 Daucus carota HOM05D002144 ORTHO05D002170 2.3e-06 55.8 96 38.5
Duzib177G0824 Durio zibethinus HOM05D002144 ORTHO05D002170 2.3e-06 55.8 68 51.5
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 2.3e-06 55.8 113 35.4
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 2.3e-06 55.8 123 35.0
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 2.3e-06 55.8 60 50.0
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 3.1e-06 55.5 80 47.5
Lsat_1_v5_gn_7_71780 Lactuca sativa HOM05D002144 ORTHO05D002170 3.1e-06 55.5 114 38.6
Psat3g011320 Pisum sativum HOM05D002144 ORTHO05D002170 3.1e-06 55.5 94 39.4
C01p50450 Brassica napus HOM05D002144 ORTHO05D002170 5.2e-06 54.7 87 39.1
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 5.2e-06 54.7 92 41.3
BraA05t22338Z Brassica rapa HOM05D002144 ORTHO05D002170 5.2e-06 54.7 88 43.2
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 5.2e-06 54.7 51 54.9
A05p35280 Brassica napus HOM05D002144 ORTHO05D002170 6.8e-06 54.3 82 45.1
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 6.8e-06 54.3 67 44.8
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 6.8e-06 54.3 68 44.1
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 6.8e-06 54.3 55 52.7
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 6.8e-06 54.3 68 50.0
Gohir.A11G268700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.9e-06 53.9 68 50.0
Gohir.D11G278700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.9e-06 53.9 68 50.0
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 8.9e-06 53.9 90 40.0
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 8.9e-06 53.9 87 39.1


User provided reference genes

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