Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G034060 Cucumis sativus L. HOM05D003357 ORTHO05D003779 7.7e-124 447.2 232 100.0
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 9.1e-117 423.7 232 94.4
Sed0022278 Sechium edule HOM05D003357 ORTHO05D003779 9.2e-85 317.4 219 74.0
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 2.1e-44 183.3 195 47.7
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 2.9e-38 162.9 239 41.4
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 1.9e-37 160.2 231 39.0
Prupe.3G032500 Prunus persica HOM05D003357 ORTHO05D003779 2.7e-36 156.4 199 44.2
QL05p001541 Quercus lobata HOM05D003357 ORTHO05D003779 6.0e-36 155.2 216 39.8
QL05p001815 Quercus lobata HOM05D003357 ORTHO05D003779 6.0e-36 155.2 216 39.8
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.4e-32 144.1 242 38.0
MD17G1152300 Malus domestica HOM05D003357 ORTHO05D003779 5.8e-31 138.7 200 41.0
Duzib235G0273 Durio zibethinus HOM05D003357 ORTHO05D003779 1.7e-30 137.1 217 38.7
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 2.2e-30 136.7 242 37.2
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 3.8e-30 136.0 228 38.2
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 6.5e-30 135.2 181 43.1
FvH4_6g35660 Fragaria vesca HOM05D003357 ORTHO05D003779 8.4e-30 134.8 188 41.0
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 2.7e-28 129.8 238 35.3
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 5.1e-27 125.6 191 42.4
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.1e-26 124.4 217 35.0
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 5.7e-26 122.1 213 33.8
Ciclev10026388m.g Citrus clementina HOM05D003357 ORTHO05D003779 7.4e-26 121.7 231 37.2
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.6e-25 120.6 217 34.6
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 2.2e-25 120.2 191 38.7
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 6.3e-25 118.6 230 31.3
Lsat_1_v5_gn_0_41661 Lactuca sativa HOM05D003357 ORTHO05D003779 2.6e-23 113.2 178 39.9
SalBow2G0668 Salvia bowleyana HOM05D003357 ORTHO05D003779 7.6e-23 111.7 231 29.4
DCAR_016095 Daucus carota HOM05D003357 ORTHO05D003779 1.0e-22 111.3 173 39.3
Atru.chr1.4118 Acer truncatum HOM05D003357 ORTHO05D003779 6.5e-22 108.6 233 34.8
Nitab4.5_0003987g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 8.8e-19 98.2 193 31.1
COL.COLO4_30848 Corchorus olitorius HOM05D003357 ORTHO05D003779 1.1e-18 97.8 157 38.2
HanXRQChr15g0497241 Helianthus annuus HOM05D003357 ORTHO05D003779 1.5e-18 97.4 172 35.5
CAN.G790.70 Capsicum annuum HOM05D003357 ORTHO05D003779 6.3e-17 92.0 176 35.2
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 6.3e-17 92.0 170 34.1
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 3.1e-16 89.7 186 30.6
Sc15g0000760 Simmondsia chinensis HOM05D003357 ORTHO05D003779 4.1e-16 89.4 180 31.7
Oeu013442.1 Olea europaea HOM05D000643 ORTHO05D000663 5.0e-14 82.4 179 29.1
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.9e-13 80.5 184 31.0
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 3.2e-13 79.7 188 31.9
Nitab4.5_0015287g0010 Nicotiana tabacum HOM05D003357 ORTHO05D003779 5.5e-13 79.0 207 26.6
SGA_v2.0_scaffold71G23911 Striga asiatica HOM05D003357 ORTHO05D003779 7.2e-13 78.6 189 28.0
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 3.6e-12 76.3 150 33.3
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.8e-11 73.9 181 32.0
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 3.9e-11 72.8 177 31.1
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 3.9e-11 72.8 150 34.0
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 3.3e-10 69.7 156 30.1
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 4.4e-10 69.3 163 29.4
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 9.7e-10 68.2 150 32.0
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.3e-09 67.8 158 31.6
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 2.2e-09 67.0 167 28.7
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 8.2e-09 65.1 182 28.0
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 8.2e-09 65.1 150 30.0
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 8.2e-09 65.1 164 28.0
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.1e-08 64.7 156 32.7
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.1e-08 64.7 152 31.6
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 1.8e-08 63.9 152 31.6
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.8e-08 63.9 155 31.0
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 1.8e-08 63.9 155 31.0
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 1.8e-08 63.9 155 31.0
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 2.4e-08 63.5 153 32.0
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 2.4e-08 63.5 153 32.0
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 3.1e-08 63.2 163 30.7
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 3.1e-08 63.2 155 31.0
Zm00001eb099990 Zea mays HOM05D003357 ORTHO05D003779 3.1e-08 63.2 199 27.1
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 4.1e-08 62.8 196 30.1
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 4.1e-08 62.8 161 29.2
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 5.3e-08 62.4 155 31.6
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 7.0e-08 62.0 168 30.4
Aqoxy5G02480 Aquilegia oxysepala HOM05D003357 ORTHO05D003779 9.1e-08 61.6 166 29.5
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 9.1e-08 61.6 135 31.1
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 9.1e-08 61.6 160 29.4
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.2e-07 61.2 161 29.2
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 1.2e-07 61.2 152 30.3
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.2e-07 61.2 152 30.3
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.2e-07 61.2 152 30.3
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.2e-07 61.2 152 30.3
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 1.2e-07 61.2 155 32.3
Duzib150G0577 Durio zibethinus HOM05D000973 ORTHO05D000652 1.5e-07 60.8 175 31.4
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 1.5e-07 60.8 133 33.1
SEGI_24152 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.5e-07 60.8 168 25.6
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 2.0e-07 60.5 139 35.3
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 2.0e-07 60.5 156 30.8
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 2.0e-07 60.5 136 30.9
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 2.6e-07 60.1 154 31.8
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 2.6e-07 60.1 147 31.3
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 2.6e-07 60.1 155 28.4
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 3.4e-07 59.7 170 25.9
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 3.4e-07 59.7 148 31.1
CANSAT11G1252 Cannabis sativa HOM05D003357 ORTHO05D003779 3.4e-07 59.7 173 28.9
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 3.4e-07 59.7 159 30.2
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 3.4e-07 59.7 148 31.8
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 3.4e-07 59.7 148 31.8
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 3.4e-07 59.7 148 31.8
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 3.4e-07 59.7 180 28.9
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 3.4e-07 59.7 158 29.7
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 3.4e-07 59.7 162 30.2
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 3.4e-07 59.7 164 29.3
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 3.4e-07 59.7 124 34.7
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 3.4e-07 59.7 127 33.1
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 3.4e-07 59.7 162 29.6
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.5e-07 59.3 180 30.6
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 4.5e-07 59.3 180 28.9
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 4.5e-07 59.3 158 29.1
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 4.5e-07 59.3 132 34.1
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 7.7e-07 58.5 162 28.4
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 1.0e-06 58.2 174 28.2
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.3e-06 57.8 171 31.6
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.7e-06 57.4 162 28.4
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.7e-06 57.4 162 28.4
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 1.7e-06 57.4 183 27.9
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 1.7e-06 57.4 159 29.6
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 1.7e-06 57.4 170 28.2
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 1.7e-06 57.4 163 29.4
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 2.2e-06 57.0 164 28.0
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.2e-06 57.0 136 33.1
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 2.2e-06 57.0 152 30.3
Thecc.06G128300 Theobroma cacao HOM05D003357 ORTHO05D003779 2.2e-06 57.0 79 34.2
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 2.9e-06 56.6 135 32.6
MD15G1419800 Malus domestica HOM05D003357 ORTHO05D003779 2.9e-06 56.6 158 27.8
Psat1g219760 Pisum sativum HOM05D003357 ORTHO05D003779 2.9e-06 56.6 119 33.6
ClCG03G014140 Citrullus lanatus HOM05D000973 ORTHO05D000652 3.8e-06 56.2 195 28.2
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 3.8e-06 56.2 170 28.2
CiPaw.05G042100 Carya illinoinensis HOM05D003357 ORTHO05D003779 6.5e-06 55.5 167 29.3
Migut.B00658 Erythranthe guttata HOM05D003357 ORTHO05D003779 6.5e-06 55.5 148 29.7
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 6.5e-06 55.5 155 29.0
Ah.01g014790 Amaranthus hybridus HOM05D000973 ORTHO05D000652 8.5e-06 55.1 174 27.6


User provided reference genes

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