Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 3.7e-149 531.6 275 100.0
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 2.8e-133 478.8 275 88.7
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 6.3e-117 424.5 277 79.1
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 7.3e-97 357.8 193 96.4
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 7.8e-91 337.8 285 62.8
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.5e-89 332.8 284 61.6
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 3.3e-89 332.4 285 60.4
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 3.3e-89 332.4 282 62.4
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 5.6e-89 331.6 283 61.5
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 5.6e-89 331.6 285 64.6
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.8e-88 329.3 282 62.1
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 2.8e-88 329.3 285 59.3
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 4.7e-88 328.6 278 61.5
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 6.2e-88 328.2 272 62.9
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.8e-87 326.6 283 62.5
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.3e-87 326.2 292 60.6
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 3.1e-87 325.9 282 60.6
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.5e-86 323.6 285 58.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.4e-86 322.4 272 62.1
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 4.4e-86 322.0 285 61.4
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 9.8e-86 320.9 286 60.8
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.9e-85 319.3 276 60.9
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 4.9e-85 318.5 276 60.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 4.9e-85 318.5 285 61.1
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 1.1e-84 317.4 276 59.4
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 1.1e-84 317.4 276 59.4
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.4e-84 317.0 283 61.5
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 1.4e-84 317.0 285 60.4
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-84 316.6 285 60.7
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 1.9e-84 316.6 285 58.6
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 4.1e-84 315.5 284 59.5
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 7.1e-84 314.7 288 58.3
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 1.6e-83 313.5 276 58.7
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.7e-83 312.8 277 59.2
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 2.7e-83 312.8 287 58.5
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 4.6e-83 312.0 284 58.8
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 6.0e-83 311.6 234 68.8
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 6.0e-83 311.6 285 57.9
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 7.8e-83 311.2 277 58.8
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 7.8e-83 311.2 283 59.0
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 1.0e-82 310.8 273 59.0
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 1.0e-82 310.8 284 58.5
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 2.3e-82 309.7 282 58.5
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 3.9e-82 308.9 276 59.8
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 5.1e-82 308.5 278 58.3
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.1e-82 308.5 277 60.6
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 6.6e-82 308.1 282 58.5
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.5e-81 307.0 277 60.3
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 1.5e-81 307.0 277 56.7
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 1.9e-81 306.6 268 58.2
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 2.5e-81 306.2 284 57.7
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 4.3e-81 305.4 277 57.4
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 5.6e-81 305.1 282 58.2
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 5.6e-81 305.1 277 57.4
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 5.6e-81 305.1 221 71.0
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 5.6e-81 305.1 284 57.4
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 7.3e-81 304.7 284 57.7
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 9.5e-81 304.3 277 57.4
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 9.5e-81 304.3 279 58.4
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 9.5e-81 304.3 225 68.4
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 1.2e-80 303.9 276 56.9
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 1.2e-80 303.9 282 57.8
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 1.6e-80 303.5 276 56.9
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 2.1e-80 303.1 276 57.6
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 2.1e-80 303.1 279 58.4
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 6.2e-80 301.6 282 57.1
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.1e-79 300.8 279 57.0
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.1e-79 300.8 284 56.7
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.4e-79 300.4 282 56.0
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 3.1e-79 299.3 281 54.8
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 4.0e-79 298.9 282 56.4
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 4.0e-79 298.9 282 57.4
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 6.8e-79 298.1 289 54.7
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 8.9e-79 297.7 287 56.4
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 8.9e-79 297.7 279 57.0
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.2e-78 297.4 285 57.2
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.5e-78 297.0 282 56.0
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.5e-78 297.0 279 56.6
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.0e-78 296.6 277 59.2
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.6e-78 296.2 287 55.1
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 3.4e-78 295.8 277 58.1
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.4e-78 295.4 277 57.8
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 1.7e-77 293.5 278 55.0
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 4.9e-77 292.0 294 53.7
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 1.2e-75 287.3 340 48.5
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.7e-75 286.2 218 67.4
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 4.6e-75 285.4 281 53.0
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 7.8e-75 284.6 243 60.1
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.0e-74 284.3 286 53.5
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 3.9e-74 282.3 222 64.0
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 3.9e-74 282.3 312 52.2
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 8.6e-74 281.2 277 54.5
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.5e-73 279.6 303 53.1
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 3.3e-73 279.3 281 54.1
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 4.3e-73 278.9 282 54.3
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 4.3e-73 278.9 224 63.4
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.2e-72 277.3 193 71.0
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 2.8e-72 276.2 222 61.7
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 4.7e-72 275.4 284 52.5
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 1.1e-71 274.2 282 51.1
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.5e-70 270.4 301 50.8
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 1.5e-70 270.4 218 62.4
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 2.0e-70 270.0 194 68.6
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 2.6e-70 269.6 289 52.9
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 3.4e-70 269.2 281 52.7
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 3.8e-69 265.8 283 50.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 6.4e-69 265.0 221 61.1
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 5.4e-68 261.9 306 52.0
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 7.1e-68 261.5 268 51.1
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 9.3e-68 261.2 275 52.4
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.1e-67 260.0 211 64.5
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 2.7e-67 259.6 277 49.1
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 1.7e-66 256.9 285 49.8
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.3e-66 256.5 217 59.9
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 8.7e-66 254.6 194 66.0
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 1.5e-65 253.8 210 61.9
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 5.6e-65 251.9 288 48.3
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 6.9e-63 245.0 268 51.1
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.3e-61 240.7 279 51.3
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 2.9e-61 239.6 214 57.0
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.0e-58 231.1 223 54.3
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.6e-56 223.8 203 58.1
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 3.1e-55 219.5 240 53.3
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.9e-54 214.5 169 65.7
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.0e-45 188.0 288 39.9
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 4.2e-44 182.6 229 42.4
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.1e-39 166.4 210 50.0
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.5e-36 156.8 125 66.4
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.5e-33 147.5 195 46.7
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 1.9e-33 147.1 195 44.6
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 5.7e-33 145.6 225 38.2
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 9.7e-33 144.8 96 70.8
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 2.8e-32 143.3 96 68.8
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 1.4e-31 141.0 121 60.3
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 6.9e-31 138.7 125 60.0
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 4.2e-28 129.4 275 32.4
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.0e-21 108.2 88 60.2
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.4e-20 101.7 92 57.6
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.2e-19 101.3 129 45.7
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.6e-19 100.9 138 44.2
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 9.1e-15 85.1 205 27.3
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 5.0e-13 79.3 75 56.0
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 2.5e-12 77.0 135 39.3
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 2.0e-09 67.4 47 72.3
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.7e-08 64.3 44 63.6
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 1.7e-08 64.3 56 53.6
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 2.2e-08 63.9 92 40.2
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 3.7e-08 63.2 197 25.9
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 4.8e-08 62.8 80 43.8
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.0e-06 57.4 65 52.3
Gohir.D02G078533 Gossypium hirsutum HOM05D004903 ORTHO05D005849 3.5e-06 56.6 51 62.7
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 3.5e-06 56.6 48 62.5
Gohir.D06G112500 Gossypium hirsutum HOM05D004903 ORTHO05D036089 4.5e-06 56.2 45 64.4
Gorai.012G060300 Gossypium raimondii HOM05D004903 ORTHO05D036089 4.5e-06 56.2 33 81.8
Gohir.D04G053733 Gossypium hirsutum HOM05D004903 ORTHO05D036089 7.7e-06 55.5 30 86.7
Gohir.D05G314400 Gossypium hirsutum HOM05D001728 ORTHO05D004321 7.7e-06 55.5 30 86.7
Gohir.D07G051800 Gossypium hirsutum HOM05D001728 ORTHO05D004321 7.7e-06 55.5 30 86.7
Gohir.D09G047000 Gossypium hirsutum HOM05D001361 ORTHO05D002529 7.7e-06 55.5 30 86.7


User provided reference genes

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