Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 2040.0 1026 100.0
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1638.2 970 86.5
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1477.2 764 96.1
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1345.1 764 87.8
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1341.3 764 87.6
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1333.9 764 87.6
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1236.1 758 80.6
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1232.2 774 77.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1219.5 770 77.8
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1202.6 758 78.4
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1201.8 763 77.7
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1199.5 807 74.2
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1198.3 811 74.1
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1198.3 765 77.5
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1197.6 764 77.9
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1197.2 756 78.0
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1194.9 752 80.3
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1194.5 756 77.9
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1193.7 756 77.8
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1189.9 764 76.4
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1186.8 765 76.7
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1181.0 765 75.7
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1180.6 758 77.2
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1178.7 759 77.1
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1177.2 764 76.2
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1176.4 765 76.5
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1174.8 803 72.5
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1172.1 759 76.8
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1167.9 765 75.6
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1164.4 764 75.7
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1164.4 766 75.5
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1163.3 758 76.1
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1162.1 765 75.2
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1161.0 768 75.4
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1160.2 759 75.8
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1158.3 762 74.8
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1157.5 767 75.1
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1156.0 765 75.7
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1155.6 758 75.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1152.9 762 75.2
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1145.6 758 73.9
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1144.8 764 73.4
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1142.1 757 73.7
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1141.7 763 73.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1139.4 760 74.5
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1139.0 756 74.6
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1138.6 757 73.7
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1137.5 740 76.4
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1135.2 758 74.4
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1133.2 736 74.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1132.5 756 74.6
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1130.5 867 67.8
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1129.8 769 72.8
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 759 72.2
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1121.7 757 71.1
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1121.7 760 73.3
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1120.5 757 71.6
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 758 73.9
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1119.8 757 71.2
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1119.4 757 71.5
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1117.1 759 71.5
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1117.1 759 71.1
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1115.9 757 71.3
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1115.1 759 71.3
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1110.5 757 72.8
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1108.6 757 71.3
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1107.8 974 61.4
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1106.3 764 72.8
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1101.7 757 71.1
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1101.3 757 71.1
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1099.3 757 70.1
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1098.2 758 72.6
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1097.4 765 71.9
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1093.2 765 71.4
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1091.6 757 70.1
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1085.5 759 70.9
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1079.7 760 69.6
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1078.9 767 68.4
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1075.5 685 76.5
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 8.4e-311 1070.5 767 69.9
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.5e-307 1058.9 772 69.4
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 3.2e-307 1058.5 760 67.9
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 4.7e-306 1054.7 763 68.0
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.0e-305 1053.5 767 67.7
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 1.4e-305 1053.1 767 67.8
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 9.7e-304 1047.0 757 67.6
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.3e-303 1046.6 735 70.5
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 9.1e-302 1040.4 772 67.0
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 4.4e-296 1021.5 766 69.2
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 1.3e-295 1020.0 765 66.9
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 8.2e-295 1017.3 743 69.6
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 4.1e-294 1015.0 689 73.0
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.9e-292 1008.8 680 74.0
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 9.7e-288 993.8 779 65.1
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.7e-284 983.0 727 68.5
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 9.4e-283 977.2 758 64.9
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 1.3e-279 966.8 652 73.6
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 7.0e-278 961.1 739 66.4
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 6.8e-273 944.5 731 64.2
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 2.3e-268 929.5 555 82.5
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 8.6e-268 927.5 758 61.7
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 1.9e-267 926.4 756 62.4
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.5e-267 926.0 777 60.0
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 5.6e-267 924.9 776 62.6
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-258 897.1 619 73.7
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.0e-257 892.1 647 70.3
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 3.3e-243 845.9 672 64.9
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 3.4e-240 835.9 703 59.9
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-238 830.1 647 64.6
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 8.7e-228 794.7 517 74.7
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 5.3e-225 785.4 517 75.4
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.6e-216 756.5 769 54.5
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 1.5e-184 651.0 448 71.7
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 8.0e-181 638.6 428 73.1
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.3e-143 514.2 347 72.0
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 2.1e-141 507.7 356 72.5
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.9e-129 468.0 591 46.5
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.1e-116 425.6 257 81.3
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.7e-114 418.3 346 59.0
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 3.8e-98 364.0 249 68.3
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 2.2e-90 338.2 249 67.9
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.5e-78 298.9 364 48.1
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 2.4e-76 291.6 260 62.3
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 9.4e-73 279.6 266 56.8
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.1e-71 273.9 187 71.7
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.5e-65 255.8 164 77.4
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 9.4e-65 253.1 252 54.8
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 4.7e-64 250.8 223 57.0
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.7e-63 246.9 146 83.6
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.5e-59 234.6 146 80.1
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.0e-55 223.0 196 60.7
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.7e-45 188.0 109 84.4
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.9e-45 187.6 113 82.3
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 7.0e-44 183.7 109 82.6
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 9.1e-44 183.3 150 62.0
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-43 180.3 207 48.3
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.3e-42 179.5 112 75.9
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.2e-38 166.4 106 71.7
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 1.5e-38 166.0 140 58.6
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.4e-38 164.9 101 74.3
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 7.8e-35 153.7 102 74.5
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 1.0e-34 153.3 84 82.1
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.3e-34 152.9 83 86.7
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 8.6e-34 150.2 95 72.6
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-31 143.3 107 71.0
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.0e-31 143.3 107 71.0
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.0e-31 143.3 88 79.5
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.8e-31 142.5 102 66.7
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.3e-31 142.1 107 70.1
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.6e-30 138.7 92 76.1
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.8e-30 136.7 88 75.0
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 4.9e-29 134.4 94 71.3
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 3.6e-24 118.2 75 73.3
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 8.1e-24 117.1 224 38.4
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 5.8e-22 110.9 224 37.5
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.3e-21 109.8 163 42.3
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 1.7e-21 109.4 81 65.4
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.7e-21 108.2 80 65.0
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.3e-18 99.8 73 64.4
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.7e-13 82.8 120 42.5
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.4e-12 79.7 60 70.0
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.1e-11 75.9 45 75.6
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 3.9e-10 71.6 59 55.9
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 1.5e-09 69.7 171 34.5
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 1.2e-08 66.6 44 65.9
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 1.2e-06 60.1 51 58.8
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-06 60.1 50 58.0


User provided reference genes

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