Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 8.0e-197 690.3 356 100.0
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.5e-171 606.3 350 92.0
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 4.3e-166 588.2 361 85.9
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 9.6e-134 480.7 362 72.9
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.9e-97 360.1 365 58.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 1.0e-95 354.4 365 57.0
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 9.8e-86 321.2 375 51.5
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.7e-82 310.5 381 51.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.5e-81 306.6 369 50.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.2e-81 305.1 365 51.0
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 6.1e-80 302.0 368 50.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.8e-79 300.4 378 48.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.4e-78 295.8 377 48.5
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 7.5e-78 295.0 376 49.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 9.8e-78 294.7 375 49.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.3e-77 294.3 375 49.9
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.3e-77 294.3 404 46.0
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.1e-76 291.2 380 48.7
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.4e-76 290.8 381 48.6
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.4e-76 290.8 377 49.1
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.8e-76 290.4 362 48.6
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.1e-76 289.7 406 46.3
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 9.2e-76 288.1 375 47.5
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.2e-75 287.7 360 51.1
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 3.5e-75 286.2 395 46.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.0e-74 284.6 417 43.9
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.9e-74 283.1 378 48.4
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 8.6e-74 281.6 401 44.4
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.9e-73 280.4 379 46.2
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.2e-72 277.7 373 49.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-72 277.3 416 43.5
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 2.1e-72 276.9 410 46.3
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 6.1e-72 275.4 388 47.7
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.0e-71 272.7 381 47.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 5.2e-71 272.3 414 44.0
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 8.9e-71 271.6 388 46.9
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 8.9e-71 271.6 387 45.0
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.5e-70 270.8 427 42.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.6e-70 270.0 372 47.8
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.6e-70 270.0 376 48.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.9e-69 265.8 391 45.3
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.9e-69 265.8 380 45.5
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 8.3e-69 265.0 375 47.7
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.4e-68 264.2 408 43.6
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-68 263.8 406 42.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.4e-68 263.5 383 45.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 4.1e-68 262.7 377 45.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.0e-67 260.4 335 48.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.7e-67 260.0 375 46.7
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.5e-67 259.6 379 47.8
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.6e-67 259.2 405 42.5
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.7e-66 257.3 383 44.9
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.0e-66 255.8 398 43.5
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.5e-65 253.4 413 41.4
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.3e-65 252.7 383 42.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.3e-65 252.7 383 42.6
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.6e-65 252.3 391 45.8
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.6e-65 252.3 375 45.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.3e-65 251.9 406 41.6
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 6.2e-64 248.8 392 45.4
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.1e-63 246.5 400 40.5
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.6e-62 243.4 390 42.8
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.2e-61 240.4 367 45.8
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.2e-61 240.4 379 42.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.9e-61 239.2 390 44.1
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 8.3e-61 238.4 389 41.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.6e-59 234.2 389 39.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 1.7e-58 230.7 267 52.4
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 5.0e-58 229.2 395 41.3
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-57 228.0 321 46.7
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.9e-57 227.3 389 39.1
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.3e-57 226.5 365 41.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 4.3e-57 226.1 404 41.6
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.3e-57 226.1 372 43.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.3e-57 225.3 367 43.9
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.6e-56 224.2 414 40.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 1.6e-56 224.2 391 39.4
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.7e-56 222.6 409 39.4
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.1e-56 221.9 370 41.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.0e-55 219.5 385 39.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 8.9e-55 218.4 391 39.9
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.9e-55 218.4 380 40.5
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.2e-54 218.0 364 39.8
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.5e-54 217.6 389 41.6
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.0e-54 217.2 371 41.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.0e-54 217.2 364 39.8
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 7.5e-54 215.3 319 44.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.3e-53 214.5 391 40.4
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.7e-53 214.2 397 39.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.2e-53 213.8 365 43.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.4e-53 212.2 259 54.1
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 8.3e-53 211.8 391 39.4
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.4e-52 211.1 316 44.9
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.2e-52 209.9 391 39.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 9.2e-52 208.4 386 40.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 9.2e-52 208.4 391 38.4
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.2e-51 208.0 393 38.7
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.6e-51 206.1 261 46.4
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 1.0e-50 204.9 368 38.6
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.0e-50 204.9 403 39.5
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.3e-50 204.5 386 39.6
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.3e-50 204.5 386 39.6
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.3e-50 203.8 386 39.6
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.1e-49 201.4 386 39.6
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.1e-48 197.2 386 39.1
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.2e-46 191.4 319 39.8
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.2e-45 187.2 403 37.7
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 6.4e-45 185.7 404 37.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 4.1e-44 183.0 380 39.2
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 7.1e-44 182.2 402 36.8
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.0e-42 176.8 289 42.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.2e-38 164.9 376 34.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-38 164.9 398 34.9
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 4.2e-36 156.4 398 34.2
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 4.6e-35 152.9 398 33.7
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.7e-34 151.0 188 48.9
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.1e-33 148.3 357 33.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 2.5e-33 147.1 188 46.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 4.3e-33 146.4 229 39.7
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 9.6e-33 145.2 397 31.0
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 9.6e-33 145.2 223 43.9
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.1e-32 144.1 219 43.4
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 4.8e-32 142.9 225 41.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.4e-30 136.7 222 41.9
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 4.5e-30 136.3 221 39.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 7.6e-30 135.6 236 38.6
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 9.9e-30 135.2 418 33.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.7e-29 134.4 205 40.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.4e-29 132.5 238 36.1
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.4e-29 132.5 217 39.6
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 8.4e-29 132.1 242 37.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 8.4e-29 132.1 414 31.2
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.9e-28 131.0 401 31.9
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.4e-28 129.4 384 32.0
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 7.1e-28 129.0 230 45.7
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.5e-27 126.7 368 33.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 6.0e-27 125.9 205 39.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 7.9e-27 125.6 223 39.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.8e-26 124.4 242 38.0
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.1e-26 122.9 226 38.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 8.7e-26 122.1 223 38.1
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.5e-25 121.3 224 37.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 7.4e-25 119.0 267 33.7
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-24 117.5 208 36.5
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.8e-23 114.4 217 36.9
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.0e-23 113.2 238 36.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-23 113.2 218 34.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.3e-23 112.8 335 32.8
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 5.3e-23 112.8 201 40.8
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 9.0e-23 112.1 246 38.6
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-22 111.7 208 37.0
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.5e-22 111.3 228 36.4
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.0e-22 110.9 232 35.8
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 3.5e-19 100.1 245 32.7
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.0e-18 98.6 230 33.5
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-17 94.7 60 61.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.3e-17 93.6 60 58.3
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 9.6e-17 92.0 62 59.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.4e-15 88.2 143 34.3
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.4e-15 88.2 143 34.3
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.8e-15 87.8 124 40.3
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 4.9e-13 79.7 51 62.7
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.9e-12 77.8 203 32.5
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.1e-12 75.9 150 40.0
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.2e-11 75.1 183 33.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.2e-11 75.1 47 66.0
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.0e-10 72.0 151 37.7
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.7e-10 68.9 117 42.7
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 3.4e-06 57.0 119 37.0
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 5.9e-06 56.2 141 36.9


User provided reference genes

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