Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 8.1e-123 443.7 221 100.0
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 4.9e-120 434.5 225 96.9
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 4.3e-100 368.2 221 83.3
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 4.8e-99 364.8 225 81.3
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 3.1e-82 308.9 237 72.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.5e-76 290.0 217 67.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 4.8e-75 285.0 211 67.3
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 1.1e-74 283.9 218 65.6
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.5e-73 280.0 207 67.6
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.0e-73 279.6 223 65.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.0e-73 279.6 178 75.8
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 2.0e-73 279.6 222 66.7
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 2.6e-73 279.3 216 65.7
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 3.4e-73 278.9 213 66.2
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.7e-72 276.6 193 71.0
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 5.0e-72 275.0 220 65.5
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 5.0e-72 275.0 157 80.9
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 8.5e-72 274.2 220 64.1
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 2.5e-71 272.7 218 65.1
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.2e-71 272.3 202 68.3
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 4.2e-71 271.9 215 64.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 5.5e-71 271.6 221 67.9
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.2e-71 271.2 214 63.1
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.7e-70 269.2 151 81.5
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 3.6e-70 268.9 201 67.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 6.1e-70 268.1 223 63.2
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 7.9e-70 267.7 193 67.9
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.4e-69 266.9 225 61.3
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.4e-69 266.9 202 67.3
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.8e-69 266.5 150 82.0
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 2.3e-69 266.2 222 60.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.9e-69 265.4 218 63.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 8.8e-69 264.2 222 62.2
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 8.8e-69 264.2 160 76.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 8.8e-69 264.2 215 63.3
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.5e-68 263.5 186 67.7
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.7e-68 261.5 144 82.6
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 5.7e-68 261.5 151 80.1
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 7.4e-68 261.2 189 69.8
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.8e-67 259.2 151 77.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 3.7e-67 258.8 217 60.8
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 4.8e-67 258.5 219 60.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.8e-67 258.5 221 60.6
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 6.3e-67 258.1 221 58.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.8e-66 256.5 158 74.7
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.8e-66 256.5 224 60.3
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 2.4e-66 256.1 225 60.0
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.1e-66 255.8 218 64.2
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.3e-66 255.0 185 69.2
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 7.0e-66 254.6 186 67.7
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 9.1e-66 254.2 190 67.4
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 9.1e-66 254.2 164 71.3
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.6e-65 253.4 208 61.1
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 2.0e-65 253.1 186 64.5
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 2.6e-65 252.7 147 79.6
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 3.5e-65 252.3 161 73.9
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 7.7e-65 251.1 213 59.2
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.7e-65 251.1 213 61.5
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.7e-64 250.0 198 64.6
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.9e-64 249.2 209 61.7
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 5.0e-64 248.4 161 73.3
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 6.5e-64 248.1 208 59.6
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 6.5e-64 248.1 160 70.6
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 8.5e-64 247.7 159 74.8
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.1e-63 247.3 177 70.1
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.1e-63 247.3 149 75.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.1e-63 247.3 179 67.0
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.9e-63 246.5 167 71.3
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.9e-63 246.5 181 66.9
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 2.5e-63 246.1 198 67.2
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 4.2e-63 245.4 200 63.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.5e-63 245.0 255 52.9
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 5.5e-63 245.0 147 74.8
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.4e-63 244.2 144 77.8
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.6e-62 243.4 144 77.1
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 4.0e-61 238.8 158 71.5
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 4.0e-61 238.8 195 64.1
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 8.8e-61 237.7 179 63.7
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 8.8e-61 237.7 157 73.9
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.1e-60 237.3 141 77.3
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.5e-60 236.9 199 61.8
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 5.7e-60 235.0 162 65.4
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 7.5e-60 234.6 180 61.7
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.3e-59 233.8 137 76.6
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.3e-59 233.8 176 67.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 2.2e-59 233.0 178 68.5
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.8e-59 231.9 256 51.6
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 2.4e-58 229.6 196 62.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.2e-57 227.3 160 70.0
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.0e-57 226.5 179 62.0
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.0e-56 224.2 196 63.8
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.9e-56 222.6 266 49.6
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.1e-55 220.7 228 52.2
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.5e-55 220.3 188 59.6
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 2.5e-55 219.5 129 78.3
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.5e-55 219.5 148 66.2
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 5.5e-55 218.4 219 51.6
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 5.5e-55 218.4 212 56.1
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.7e-54 216.1 232 51.7
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.0e-53 214.2 231 52.4
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.0e-53 214.2 145 68.3
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.0e-53 214.2 145 68.3
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 1.2e-52 210.7 181 61.3
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.6e-52 209.5 203 53.2
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 3.4e-52 209.1 251 48.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 3.4e-52 209.1 225 51.1
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 7.5e-52 208.0 151 64.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.7e-51 206.8 142 68.3
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.2e-51 206.5 217 53.9
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-50 203.8 137 70.8
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 5.4e-50 201.8 158 59.5
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 5.4e-50 201.8 153 62.7
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 1.2e-49 200.7 155 58.1
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.6e-49 200.3 155 58.7
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 2.7e-49 199.5 159 60.4
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.7e-48 196.8 152 64.5
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.9e-48 196.1 207 47.3
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.8e-48 195.7 144 59.7
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.1e-47 194.1 144 58.3
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 7.2e-47 191.4 144 57.6
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.2e-46 190.7 209 50.7
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 4.7e-46 188.7 144 56.2
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 4.7e-46 188.7 144 56.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.0e-45 187.6 142 57.7
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-45 186.8 144 55.6
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 1.8e-45 186.8 144 55.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.0e-45 186.0 150 56.0
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 5.2e-45 185.3 109 77.1
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.8e-45 184.5 144 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.2e-44 184.1 185 47.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.2e-44 184.1 186 53.8
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.4e-44 182.2 144 54.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.4e-44 182.2 144 54.9
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 4.4e-44 182.2 135 67.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.8e-42 176.8 161 57.8
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 3.1e-42 176.0 137 59.1
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 2.9e-40 169.5 121 59.5
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 8.6e-40 167.9 168 54.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.3e-39 164.9 147 45.6
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.6e-38 163.7 106 68.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.0e-37 161.0 106 68.9
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 5.7e-36 155.2 126 53.2
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.3e-35 154.1 166 48.2
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 8.3e-35 151.4 131 57.3
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 1.8e-34 150.2 116 64.7
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 9.2e-34 147.9 118 61.9
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 2.0e-33 146.7 143 56.6
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.9e-33 145.2 177 46.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 3.9e-32 142.5 145 46.9
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.9e-31 140.2 182 46.2
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 2.8e-30 136.3 147 43.5
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 2.3e-29 133.3 144 54.2
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 8.9e-29 131.3 64 89.1
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 7.0e-26 121.7 151 45.7
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.6e-25 120.6 150 43.3
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.0e-25 120.2 68 75.0
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 7.8e-25 118.2 140 40.0
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 8.6e-24 114.8 64 76.6
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 3.1e-21 106.3 66 71.2
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.7e-17 93.2 57 78.9
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 1.2e-14 84.3 43 81.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 3.1e-13 79.7 85 49.4
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 4.0e-13 79.3 66 56.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.9e-11 72.4 56 60.7
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-09 67.4 105 38.1
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 2.7e-09 66.6 45 60.0
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 3.5e-09 66.2 94 40.4
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-08 64.7 93 41.9
BolC8t52839H Brassica oleracea HOM05D004068 ORTHO05D004700 3.6e-06 56.2 57 54.4


User provided reference genes

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