Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 9.0e-215 750.0 376 100.0
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 1.4e-191 672.9 374 89.0
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 8.5e-189 663.7 387 89.1
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 8.2e-184 647.1 376 87.8
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 2.5e-156 555.8 354 74.3
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 4.2e-156 555.1 349 75.6
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 9.4e-156 553.9 354 74.3
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 9.4e-156 553.9 350 74.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.7e-155 552.4 349 75.1
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 1.0e-154 550.4 350 73.1
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.4e-154 550.1 350 73.1
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 2.3e-154 549.3 350 73.1
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 2.3e-154 549.3 338 75.4
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 8.8e-154 547.4 355 73.8
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 2.6e-153 545.8 354 72.6
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 3.4e-153 545.4 347 73.5
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 4.4e-153 545.0 353 73.7
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.7e-152 543.1 352 74.1
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.7e-152 543.1 352 74.1
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.7e-152 543.1 354 73.2
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 4.9e-152 541.6 348 74.4
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 5.4e-151 538.1 354 72.3
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 9.1e-151 537.3 350 73.1
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 9.1e-151 537.3 335 74.3
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 1.2e-150 537.0 347 74.1
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 5.9e-150 534.6 354 69.8
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.6e-149 531.2 354 72.3
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 1.1e-148 530.4 335 72.5
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 1.5e-148 530.0 354 72.0
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 5.5e-148 528.1 354 70.1
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 9.5e-148 527.3 351 72.4
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 3.6e-147 525.4 354 70.1
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.7e-147 525.0 340 72.1
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 8.0e-147 524.2 351 69.2
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 8.0e-147 524.2 344 73.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.0e-146 523.9 342 71.1
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 1.0e-146 523.9 351 69.8
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 1.4e-146 523.5 354 70.1
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 6.8e-146 521.2 335 71.0
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 8.9e-146 520.8 351 68.9
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 8.9e-146 520.8 351 69.2
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 8.9e-146 520.8 351 68.9
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 8.9e-146 520.8 336 70.2
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.0e-145 519.6 335 72.2
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 2.0e-145 519.6 351 69.2
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 2.0e-145 519.6 351 69.2
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 2.0e-145 519.6 353 68.3
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 5.7e-145 518.1 351 69.2
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 9.8e-145 517.3 351 67.2
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 1.3e-144 516.9 354 67.8
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 1.7e-144 516.5 354 68.4
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.2e-144 516.2 336 71.1
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 2.2e-144 516.2 351 69.8
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.9e-144 515.8 327 72.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 6.3e-144 514.6 313 77.3
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.4e-143 513.5 346 69.9
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 5.4e-143 511.5 354 67.5
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 7.0e-143 511.1 353 70.0
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 9.2e-143 510.8 347 68.3
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.2e-142 510.4 350 68.9
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-142 510.4 315 74.9
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 1.6e-142 510.0 324 74.1
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 3.5e-142 508.8 314 75.2
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 4.6e-142 508.4 314 75.2
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 4.6e-142 508.4 306 75.5
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 5.9e-142 508.1 360 66.9
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 7.8e-142 507.7 357 67.5
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 1.7e-141 506.5 358 67.3
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 2.9e-141 505.8 339 68.7
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 3.9e-141 505.4 358 67.0
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 1.1e-140 503.8 358 67.0
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 2.5e-140 502.7 343 68.8
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 2.5e-140 502.7 353 67.1
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.6e-139 500.0 348 67.8
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 8.0e-139 497.7 350 67.4
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 8.0e-139 497.7 343 68.2
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.3e-138 496.1 351 65.0
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 6.8e-138 494.6 382 63.6
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.0e-137 493.0 355 65.6
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.4e-137 492.3 356 66.6
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 3.4e-137 492.3 334 68.9
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 4.4e-137 491.9 360 64.4
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 8.3e-136 487.6 350 66.9
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 1.4e-135 486.9 355 65.6
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 2.4e-135 486.1 356 65.2
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 9.2e-135 484.2 351 66.1
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 1.2e-134 483.8 345 65.8
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 3.5e-134 482.3 352 65.6
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.0e-133 480.7 351 65.8
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 3.0e-133 479.2 345 67.0
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 3.9e-133 478.8 442 55.0
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 8.6e-133 477.6 346 66.2
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 7.3e-132 474.6 353 67.1
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 9.5e-132 474.2 353 67.1
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 1.6e-131 473.4 350 65.4
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 2.8e-131 472.6 437 53.8
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.7e-131 471.9 354 63.6
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 4.7e-131 471.9 354 63.3
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 8.1e-131 471.1 351 63.2
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 8.1e-131 471.1 354 63.3
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 2.6e-129 466.1 357 63.0
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 9.8e-129 464.2 352 62.8
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 7.1e-127 458.0 333 64.0
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 5.1e-125 451.8 353 63.5
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 6.6e-125 451.4 354 60.2
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 3.1e-122 442.6 348 58.9
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 2.2e-120 436.4 317 62.8
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 1.6e-118 430.3 266 72.9
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 1.1e-116 424.1 325 62.5
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-115 420.6 271 72.3
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.8e-115 419.5 271 72.0
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.4e-114 416.4 271 71.6
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 2.9e-112 409.5 247 74.1
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 6.0e-110 401.7 283 64.7
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 1.1e-106 391.0 333 56.5
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 9.0e-106 387.9 300 62.7
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 1.5e-105 387.1 288 60.8
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.3e-101 373.2 228 75.4
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 4.8e-99 365.5 250 69.6
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.4e-90 336.7 206 74.3
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 4.0e-90 335.9 308 57.1
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 5.3e-90 335.5 230 64.3
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.0e-88 331.3 345 49.0
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 5.5e-87 325.5 253 61.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 7.1e-87 325.1 215 68.8
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 2.1e-86 323.6 241 64.7
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.1e-82 311.2 289 57.1
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.4e-82 310.8 347 48.1
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.2e-79 299.7 207 70.0
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 1.2e-78 297.7 349 45.6
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 2.1e-78 297.0 344 46.2
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 2.7e-78 296.6 182 78.0
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.1e-74 282.7 205 64.9
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 2.0e-73 280.4 309 46.9
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.7e-67 259.6 180 68.9
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 4.8e-59 232.6 241 52.3
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 2.5e-55 220.3 146 73.3
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 1.9e-47 194.1 151 60.9
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.6e-38 164.5 129 62.0
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 3.1e-34 150.2 223 39.9
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.3e-32 144.8 91 69.2
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.5e-31 141.4 110 65.5
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 1.2e-22 111.7 100 52.0
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 9.8e-20 102.1 91 58.2
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 6.8e-13 79.3 121 33.1
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 4.9e-11 73.2 85 48.2
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 4.7e-06 56.6 75 40.0


User provided reference genes

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