Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G029910 Cucumis sativus L. HOM05D001935 ORTHO05D010109 3.7e-45 184.5 93 100.0
MELO3C015930.2 Cucumis melo HOM05D001935 ORTHO05D010109 1.8e-39 165.6 85 97.6
ClCG09G005160 Citrullus lanatus HOM05D001935 ORTHO05D010109 1.3e-34 149.4 85 88.2
Sed0028026 Sechium edule HOM05D001935 ORTHO05D010109 3.6e-32 141.4 85 80.0
Sed0011579 Sechium edule HOM05D001935 ORTHO05D010109 8.9e-31 136.7 85 78.8
Cpa.g.sc18.27 Carica papaya HOM05D001935 ORTHO05D010109 2.4e-20 102.1 87 58.6
TWI36G1013 Tripterygium wilfordii HOM05D001935 ORTHO05D010109 4.6e-19 97.8 94 52.1
Haze_05029 Corylus avellana HOM05D001935 ORTHO05D010109 1.7e-18 95.9 85 57.6
CiPaw.07G116400 Carya illinoinensis HOM05D001935 ORTHO05D010109 2.3e-18 95.5 90 53.3
Dinv10085 Davidia involucrata HOM05D001935 ORTHO05D010109 2.3e-18 95.5 88 55.7
Thecc.01G311900 Theobroma cacao HOM05D001935 ORTHO05D010109 3.0e-18 95.1 85 56.5
Dinv10084 Davidia involucrata HOM05D001935 ORTHO05D010109 1.1e-17 93.2 88 53.4
Cfa005813 Carpinus fangiana HOM05D001935 ORTHO05D010109 1.9e-17 92.4 85 55.3
MBI18_g28444_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 2.5e-17 92.0 81 55.6
Duzib138G0891 Durio zibethinus HOM05D001935 ORTHO05D010109 4.3e-17 91.3 85 52.9
SalBow3G1122 Salvia bowleyana HOM05D001935 ORTHO05D010109 4.3e-17 91.3 88 51.1
QL12p020164 Quercus lobata HOM05D001935 ORTHO05D010109 7.3e-17 90.5 90 52.2
TAR633G2657 Trochodendron aralioides HOM05D001935 ORTHO05D010109 7.3e-17 90.5 89 52.8
Ciclev10022487m.g Citrus clementina HOM05D001935 ORTHO05D010109 9.6e-17 90.1 86 51.2
MBI19_g24818_MAGBIO Magnolia biondii HOM05D006641 ORTHO05D007573 3.6e-16 88.2 89 49.4
Manes.01G226900 Manihot esculenta HOM05D001935 ORTHO05D010109 3.6e-16 88.2 88 50.0
PGR044G2318 Punica granatum HOM05D001935 ORTHO05D010109 6.2e-16 87.4 91 51.6
CiPaw.08G090700 Carya illinoinensis HOM05D001935 ORTHO05D010109 8.1e-16 87.0 90 50.0
Atru.chr5.1024 Acer truncatum HOM05D001935 ORTHO05D010109 1.1e-15 86.7 87 49.4
Glyma.03G218900 Glycine max HOM05D001935 ORTHO05D010109 1.1e-15 86.7 78 53.8
GSVIVG01028106001 Vitis vinifera HOM05D001935 ORTHO05D010109 1.1e-15 86.7 87 54.0
COL.COLO4_23245 Corchorus olitorius HOM05D001935 ORTHO05D010109 1.4e-15 86.3 85 49.4
CSS0010042 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.8e-15 85.9 88 47.7
CSS0012652 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.8e-15 85.9 88 47.7
Phvul.001G212300 Phaseolus vulgaris HOM05D001935 ORTHO05D010109 2.4e-15 85.5 83 53.0
Atru.chr5.1021 Acer truncatum HOM05D001935 ORTHO05D010109 3.1e-15 85.1 87 48.3
Gohir.D12G129300 Gossypium hirsutum HOM05D001935 ORTHO05D010109 8.9e-15 83.6 80 50.0
Gorai.008G140400 Gossypium raimondii HOM05D001935 ORTHO05D010109 8.9e-15 83.6 80 50.0
Ca_09205_v3 Cicer arietinum L. HOM05D001935 ORTHO05D010109 1.2e-14 83.2 75 56.0
Gohir.D07G132400 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.2e-14 83.2 83 53.0
Gorai.001G143800 Gossypium raimondii HOM05D001935 ORTHO05D010109 1.2e-14 83.2 83 53.0
Lj1g0023097 Lotus japonicus HOM05D001935 ORTHO05D010109 1.2e-14 83.2 78 52.6
Gohir.A07G128000 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.5e-14 82.8 83 53.0
TAR362G0690 Trochodendron aralioides HOM05D001136 ORTHO05D010109 1.5e-14 82.8 79 57.0
Gohir.A12G125800 Gossypium hirsutum HOM05D001935 ORTHO05D010109 2.0e-14 82.4 77 50.6
Medtr7g109420 Medicago truncatula HOM05D001935 ORTHO05D010109 2.0e-14 82.4 80 55.0
TPR.G4060 Trifolium pratense HOM05D001935 ORTHO05D010109 2.0e-14 82.4 74 58.1
Psat3g020520 Pisum sativum HOM05D001935 ORTHO05D010109 2.6e-14 82.0 74 55.4
EL10As5g23517 Beta vulgaris HOM05D001935 ORTHO05D010109 4.4e-14 81.3 92 46.7
Glyma.19G215700 Glycine max HOM05D001935 ORTHO05D010109 5.8e-14 80.9 78 52.6
Potri.006G105600 Populus trichocarpa HOM05D001935 ORTHO05D010109 5.8e-14 80.9 89 48.3
Sabra16G0129700 Salix brachista HOM05D001935 ORTHO05D010109 5.8e-14 80.9 90 45.6
Potri.006G105500 Populus trichocarpa HOM05D001935 ORTHO05D010109 9.9e-14 80.1 89 48.3
Dinv12075 Davidia involucrata HOM05D001935 ORTHO05D010109 1.3e-13 79.7 76 51.3
CSS0036092 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D010109 1.7e-13 79.3 88 45.5
Gohir.A11G109500 Gossypium hirsutum HOM05D001935 ORTHO05D010109 1.7e-13 79.3 82 51.2
Potri.016G128800 Populus trichocarpa HOM05D001935 ORTHO05D010109 1.7e-13 79.3 90 45.6
Gohir.D11G115100 Gossypium hirsutum HOM05D001935 ORTHO05D010109 2.9e-13 78.6 83 49.4
Hma1.2p1_0486F.1_g163095 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 2.9e-13 78.6 88 43.2
Hma1.2p1_0486F.1_g163120 Hydrangea macrophylla HOM05D001935 ORTHO05D010109 2.9e-13 78.6 88 43.2
Aqoxy2G01830 Aquilegia oxysepala HOM05D001935 ORTHO05D010109 3.8e-13 78.2 88 46.6
Gorai.007G123300 Gossypium raimondii HOM05D001935 ORTHO05D010109 3.8e-13 78.2 83 50.6
EL10As5g23516 Beta vulgaris HOM05D001935 ORTHO05D010109 4.9e-13 77.8 88 44.3
VMungo1383G2590 Vigna mungo HOM05D001935 ORTHO05D010109 4.9e-13 77.8 75 50.7
Ah.02g112210 Amaranthus hybridus HOM05D001935 ORTHO05D010109 1.1e-12 76.6 89 47.2
Actinidia21004 Actinidia chinensis HOM05D001136 ORTHO05D001144 1.9e-12 75.9 66 53.0
SGA_v2.0_scaffold376G50276 Striga asiatica HOM05D001935 ORTHO05D010109 3.2e-12 75.1 88 43.2
Oeu038015.2 Olea europaea HOM05D001935 ORTHO05D010109 4.2e-12 74.7 89 46.1
Sabra06G0082000 Salix brachista HOM05D001935 ORTHO05D010109 4.2e-12 74.7 90 44.4
Ah.11g049310 Amaranthus hybridus HOM05D001935 ORTHO05D010109 9.3e-12 73.6 89 43.8
AUR62024666 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.2e-11 73.2 73 50.7
Rhsim13G0005200 Rhododendron simsii HOM05D001935 ORTHO05D010109 1.2e-11 73.2 91 39.6
ATR0706G209 Amborella trichopoda HOM05D001935 ORTHO05D010109 3.5e-11 71.6 89 39.3
Eucgr.H01053 Eucalyptus grandis HOM05D001935 ORTHO05D010109 3.5e-11 71.6 88 43.2
AUR62011822 Chenopodium quinoa HOM05D001935 ORTHO05D010109 7.8e-11 70.5 73 49.3
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.5e-09 66.2 71 43.7
Rhsim13G0005300 Rhododendron simsii HOM05D001935 ORTHO05D010109 3.3e-09 65.1 75 40.0
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 5.6e-09 64.3 74 43.2
AUR62024667 Chenopodium quinoa HOM05D001935 ORTHO05D010109 1.6e-08 62.8 69 44.9
ECA247G2557 Erigeron canadensis HOM05D006641 ORTHO05D007573 1.6e-08 62.8 70 44.3
SGA_v2.0_scaffold14G06923 Striga asiatica HOM05D001935 ORTHO05D001700 2.1e-08 62.4 84 39.3
Sed0026428 Sechium edule HOM05D001935 ORTHO05D001700 3.6e-08 61.6 64 46.9
unitig_0.g277 Utricularia gibba HOM05D001935 ORTHO05D010109 3.6e-08 61.6 78 42.3
Zm00001eb156470 Zea mays HOM05D001935 ORTHO05D001700 6.2e-08 60.8 88 35.2
Zm00001eb440490 Zea mays HOM05D001935 ORTHO05D001700 6.2e-08 60.8 88 35.2
MSTRG.2193 Avicennia marina HOM05D001935 ORTHO05D001700 1.4e-07 59.7 74 43.2
Solyc04g007580.1 Solanum lycopersicum HOM05D001935 ORTHO05D001700 1.4e-07 59.7 86 37.2
Sopen04g002660 Solanum pennellii HOM05D001935 ORTHO05D001700 1.4e-07 59.7 86 37.2
EL10As7g23792 Beta vulgaris HOM05D007478 ORTHO05D001700 1.8e-07 59.3 89 42.7
HanXRQChr17g0567051 Helianthus annuus HOM05D001935 ORTHO05D001700 1.8e-07 59.3 74 43.2
DCAR_005768 Daucus carota HOM05D001935 ORTHO05D010109 3.1e-07 58.5 47 59.6
DCAR_030201 Daucus carota HOM05D001935 ORTHO05D001700 3.1e-07 58.5 80 38.8
Nitab4.5_0000414g0010 Nicotiana tabacum HOM05D001935 ORTHO05D001700 3.1e-07 58.5 86 37.2
Nitab4.5_0001648g0030 Nicotiana tabacum HOM05D001935 ORTHO05D001700 3.1e-07 58.5 86 37.2
Peaxi162Scf00119g00143 Petunia axillaris HOM05D001935 ORTHO05D001700 3.1e-07 58.5 86 37.2
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 3.1e-07 58.5 85 40.0
Zm00001eb439660 Zea mays HOM05D001935 ORTHO05D001700 3.1e-07 58.5 87 35.6
MELO3C005308.2 Cucumis melo HOM05D001935 ORTHO05D001700 4.0e-07 58.2 64 45.3
CsaV3_5G028470 Cucumis sativus L. HOM05D001935 ORTHO05D001700 4.0e-07 58.2 64 45.3
HanXRQChr07g0193751 Helianthus annuus HOM05D001935 ORTHO05D001700 4.0e-07 58.2 84 40.5
Sed0010378 Sechium edule HOM05D001935 ORTHO05D001700 4.0e-07 58.2 84 38.1
PGSC0003DMG400005992 Solanum tuberosum HOM05D001935 ORTHO05D001700 5.3e-07 57.8 86 36.0
Dinv16185 Davidia involucrata HOM05D001935 ORTHO05D001700 6.9e-07 57.4 74 41.9
Eucgr.F02810 Eucalyptus grandis HOM05D001935 ORTHO05D001700 6.9e-07 57.4 88 37.5
EL10Ac5g10513 Beta vulgaris HOM05D001935 ORTHO05D010109 9.0e-07 57.0 94 37.2
FvH4_4g26170 Fragaria vesca HOM05D001935 ORTHO05D001700 9.0e-07 57.0 84 39.3
FAN07G1185 Fragaria x ananassa HOM05D001935 ORTHO05D001700 9.0e-07 57.0 84 39.3
FAN12G0731 Fragaria x ananassa HOM05D001935 ORTHO05D001700 9.0e-07 57.0 84 39.3
FAN12G2861 Fragaria x ananassa HOM05D001935 ORTHO05D001700 9.0e-07 57.0 84 39.3
FAN22G2316 Fragaria x ananassa HOM05D001935 ORTHO05D001700 9.0e-07 57.0 84 39.3
SEGI_39105 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 9.0e-07 57.0 84 40.5
Lj6P749T50 Lonicera japonica HOM05D001935 ORTHO05D001700 1.2e-06 56.6 87 40.2
ClCG01G006190 Citrullus lanatus HOM05D001935 ORTHO05D001700 1.5e-06 56.2 62 45.2
Migut.E00401 Erythranthe guttata HOM05D001935 ORTHO05D001700 1.5e-06 56.2 74 40.5
RcHm_v2.0_Chr4g0433741 Rosa chinensis HOM05D001935 ORTHO05D001700 1.5e-06 56.2 84 39.3
Atru.chr1.1571 Acer truncatum HOM05D001935 ORTHO05D001700 2.0e-06 55.8 88 38.6
Actinidia36351 Actinidia chinensis HOM05D001935 ORTHO05D001700 2.0e-06 55.8 84 39.3
Ah.02g112200 Amaranthus hybridus HOM05D007400 ORTHO05D009351 2.0e-06 55.8 50 48.0
ATR0326G068 Amborella trichopoda HOM05D001935 ORTHO05D001700 2.0e-06 55.8 86 37.2
AUR62023260 Chenopodium quinoa HOM05D001935 ORTHO05D001700 2.0e-06 55.8 85 36.5
Lsat_1_v5_gn_2_80780 Lactuca sativa HOM05D001935 ORTHO05D001700 2.0e-06 55.8 84 38.1
Os01g0686000 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 2.0e-06 55.8 61 44.3
DCAR_007278 Daucus carota HOM05D001935 ORTHO05D001700 2.6e-06 55.5 91 34.1
Hma1.2p1_0283F.1_g113680 Hydrangea macrophylla HOM05D001935 ORTHO05D001700 2.6e-06 55.5 87 37.9
Prupe.3G150600 Prunus persica HOM05D001935 ORTHO05D001700 2.6e-06 55.5 88 37.5
Sc14g0007210 Simmondsia chinensis HOM05D001935 ORTHO05D001700 2.6e-06 55.5 78 38.5
Oeu004315.1 Olea europaea HOM05D001935 ORTHO05D001700 3.4e-06 55.1 88 38.6
PGR042G0803 Punica granatum HOM05D001935 ORTHO05D001700 3.4e-06 55.1 89 36.0
SEGI_04656 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 3.4e-06 55.1 84 38.1
Thecc.02G277900 Theobroma cacao HOM05D001935 ORTHO05D001700 3.4e-06 55.1 84 38.1
CSS0049402 Camellia sinensis var. sinensis HOM05D001935 ORTHO05D001700 4.4e-06 54.7 88 38.6
Duzib251G0665 Durio zibethinus HOM05D001935 ORTHO05D001700 4.4e-06 54.7 84 38.1
Prupe.1G321600 Prunus persica HOM05D001935 ORTHO05D001700 4.4e-06 54.7 84 36.9
Sabra08G0096000 Salix brachista HOM05D001935 ORTHO05D001700 4.4e-06 54.7 88 37.5
SGA_v2.0_scaffold202G41490 Striga asiatica HOM05D001935 ORTHO05D001700 4.4e-06 54.7 88 37.5
FAN17G0536 Fragaria x ananassa HOM05D001935 ORTHO05D001700 5.8e-06 54.3 84 39.3
HanXRQChr12g0375991 Helianthus annuus HOM05D001935 ORTHO05D001700 5.8e-06 54.3 87 36.8
MBI10_g37756_MAGBIO Magnolia biondii HOM05D001935 ORTHO05D001700 5.8e-06 54.3 89 38.2
MD00G1054000 Malus domestica HOM05D001935 ORTHO05D001700 5.8e-06 54.3 90 36.7
Atru.chr11.360 Acer truncatum HOM05D001935 ORTHO05D001700 7.6e-06 53.9 87 39.1
Gohir.D05G318900 Gossypium hirsutum HOM05D001935 ORTHO05D001700 7.6e-06 53.9 84 38.1
Gorai.009G341800 Gossypium raimondii HOM05D001935 ORTHO05D001700 7.6e-06 53.9 84 38.1
Os05g0552800 Oryza sativa ssp. japonica HOM05D001935 ORTHO05D001700 7.6e-06 53.9 86 33.7
Potri.008G127200 Populus trichocarpa HOM05D001935 ORTHO05D001700 7.6e-06 53.9 84 38.1
Potri.010G116000 Populus trichocarpa HOM05D001935 ORTHO05D001700 7.6e-06 53.9 61 44.3
QL01p002600 Quercus lobata HOM05D001935 ORTHO05D001700 7.6e-06 53.9 87 34.5
unitig_24.g30589 Utricularia gibba HOM05D001935 ORTHO05D001700 7.6e-06 53.9 84 36.9
Cc11_g09100 Coffea canephora HOM05D001935 ORTHO05D001700 9.9e-06 53.5 74 37.8
unitig_22.g5581 Utricularia gibba HOM05D001935 ORTHO05D001700 9.9e-06 53.5 84 36.9


User provided reference genes

Program Settings