Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 2.0e-72 275.8 150 100.0
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 3.9e-60 235.0 152 87.5
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 4.8e-42 174.9 148 59.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 5.3e-41 171.4 167 64.1
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 3.4e-40 168.7 154 57.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 1.3e-26 123.6 146 49.3
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.4e-24 115.5 142 45.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 4.5e-24 115.2 152 48.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 5.8e-24 114.8 140 47.1
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 6.5e-23 111.3 144 43.8
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 6.5e-23 111.3 145 47.6
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.1e-22 110.5 149 43.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 3.2e-22 109.0 150 50.0
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 7.1e-22 107.8 154 43.5
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 7.1e-22 107.8 142 38.0
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 9.3e-22 107.5 145 44.1
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.6e-21 106.7 151 48.3
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.7e-21 105.9 166 47.0
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 1.0e-20 104.0 153 42.5
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.3e-20 102.8 149 36.2
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.9e-20 102.1 150 48.7
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.9e-20 102.1 150 48.7
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 8.7e-20 100.9 125 52.8
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.1e-19 100.5 171 42.7
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.1e-19 100.5 153 41.8
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.5e-19 100.1 139 50.4
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.9e-19 99.8 148 40.5
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 3.3e-19 99.0 149 45.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 3.3e-19 99.0 166 44.0
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 4.3e-19 98.6 163 39.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 9.7e-19 97.4 171 42.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 9.7e-19 97.4 157 44.6
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 9.7e-19 97.4 154 48.1
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 9.7e-19 97.4 147 44.2
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.3e-18 97.1 125 44.0
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.3e-18 97.1 187 36.4
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.3e-18 97.1 150 49.3
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.6e-18 96.7 158 39.2
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.2e-18 96.3 145 37.2
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.8e-18 95.9 136 49.3
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.8e-18 95.9 153 45.1
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 2.8e-18 95.9 143 44.8
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 4.8e-18 95.1 146 43.8
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 4.8e-18 95.1 180 38.3
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 6.3e-18 94.7 135 44.4
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 8.2e-18 94.4 151 47.7
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.1e-17 94.0 174 35.6
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.1e-17 94.0 156 49.4
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.8e-17 93.2 152 38.8
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.4e-17 92.8 155 39.4
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 2.4e-17 92.8 123 43.9
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 3.1e-17 92.4 167 37.7
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 3.1e-17 92.4 152 38.8
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 3.1e-17 92.4 153 43.8
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 4.1e-17 92.0 166 39.8
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 4.1e-17 92.0 174 41.4
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 6.9e-17 91.3 152 36.8
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.9e-17 91.3 158 39.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 6.9e-17 91.3 194 38.1
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 9.0e-17 90.9 164 43.9
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 1.2e-16 90.5 125 47.2
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 1.2e-16 90.5 140 42.1
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.5e-16 90.1 115 49.6
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 2.0e-16 89.7 132 44.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 2.6e-16 89.4 173 35.8
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.4e-16 89.0 145 40.7
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.4e-16 89.0 115 49.6
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.4e-16 89.0 161 42.9
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 3.4e-16 89.0 135 36.3
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 3.4e-16 89.0 135 42.2
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 4.5e-16 88.6 164 42.7
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 5.9e-16 88.2 140 46.4
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 7.6e-16 87.8 159 38.4
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 7.6e-16 87.8 52 63.5
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 7.6e-16 87.8 129 49.6
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 7.6e-16 87.8 165 44.2
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.6e-16 87.8 142 45.8
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.0e-15 87.4 152 38.2
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.0e-15 87.4 140 40.0
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-15 87.0 115 47.8
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.7e-15 86.7 147 39.5
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-15 86.7 154 37.0
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.8e-15 85.5 52 59.6
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 6.5e-15 84.7 118 47.5
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 6.5e-15 84.7 52 61.5
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.5e-15 84.7 119 42.0
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 1.1e-14 84.0 53 60.4
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.1e-14 84.0 52 63.5
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.1e-14 84.0 52 63.5
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.1e-14 84.0 52 63.5
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.4e-14 83.6 52 63.5
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.2e-14 82.4 52 61.5
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 4.2e-14 82.0 173 32.9
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.5e-14 81.6 53 56.6
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 9.3e-14 80.9 145 40.0
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 1.2e-13 80.5 146 33.6
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.2e-13 80.5 209 30.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.1e-13 79.7 162 35.8
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-12 76.6 121 37.2
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.8e-12 76.6 147 36.1
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.8e-12 76.6 147 36.1
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.0e-12 75.9 147 35.4
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 3.9e-12 75.5 56 51.8
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 5.1e-12 75.1 53 52.8
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 5.1e-12 75.1 53 52.8
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 5.1e-12 75.1 56 51.8
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 5.1e-12 75.1 56 51.8
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 5.1e-12 75.1 56 51.8
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 5.1e-12 75.1 51 52.9
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.7e-12 74.7 147 36.1
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 8.8e-12 74.3 53 52.8
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 8.8e-12 74.3 53 52.8
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 8.8e-12 74.3 53 52.8
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.1e-11 73.9 50 54.0
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-11 73.9 127 35.4
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.1e-11 73.9 166 39.8
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.5e-11 73.6 50 52.0
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 1.9e-11 73.2 56 50.0
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 1.9e-11 73.2 56 50.0
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.5e-11 72.8 154 39.6
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.5e-11 72.8 155 32.9
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.5e-11 72.8 114 42.1
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 3.3e-11 72.4 53 49.1
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 3.3e-11 72.4 53 49.1
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 3.3e-11 72.4 53 49.1
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 3.3e-11 72.4 53 49.1
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 4.3e-11 72.0 162 32.7
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.7e-11 71.6 172 37.8
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 9.7e-11 70.9 49 53.1
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.3e-10 70.5 49 51.0
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 1.7e-10 70.1 117 41.9
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.7e-10 70.1 55 54.5
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 2.2e-10 69.7 119 44.5
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 2.2e-10 69.7 151 29.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 2.8e-10 69.3 47 55.3
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.8e-10 69.3 149 28.2
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.7e-10 68.9 129 32.6
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 4.8e-10 68.6 143 35.0
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 4.8e-10 68.6 181 37.0
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 6.3e-10 68.2 49 49.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 8.2e-10 67.8 161 33.5
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 8.2e-10 67.8 48 50.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 8.2e-10 67.8 135 34.1
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 8.2e-10 67.8 135 34.1
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.1e-09 67.4 49 49.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.1e-09 65.9 157 31.8
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.2e-08 63.9 50 48.0
Nn3g17864 Nelumbo nucifera HOM05D005179 ORTHO05D006225 2.0e-08 63.2 144 29.9
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.4e-08 62.4 111 32.4
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 7.7e-08 61.2 57 36.8
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.0e-07 60.8 54 37.0
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.3e-07 60.5 139 31.7
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.2e-07 59.7 46 43.5
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 2.2e-07 59.7 46 52.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 2.9e-07 59.3 45 48.9


User provided reference genes

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