Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 5.3e-299 1030.4 579 100.0
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.0e-242 842.4 628 76.9
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.6e-194 683.3 613 66.6
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 1.5e-128 464.2 635 49.8
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 5.8e-128 462.2 612 50.5
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 2.1e-74 284.3 625 39.0
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 5.3e-73 279.6 633 37.8
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 3.8e-71 273.5 658 37.5
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 5.0e-71 273.1 653 37.1
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.1e-70 271.9 648 35.3
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 2.7e-69 267.3 608 36.3
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.7e-69 267.3 613 37.2
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 1.0e-68 265.4 650 35.4
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.5e-67 261.5 601 38.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 1.9e-67 261.2 635 35.4
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 7.4e-67 259.2 574 36.2
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 2.2e-66 257.7 660 38.3
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 4.8e-66 256.5 633 35.9
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.3e-66 256.1 550 36.4
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 3.1e-65 253.8 643 35.5
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.1e-65 253.8 643 35.8
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 6.9e-65 252.7 601 37.9
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 1.2e-64 251.9 624 38.6
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.5e-64 251.5 647 35.7
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-64 250.8 583 36.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 2.6e-64 250.8 612 35.8
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 4.5e-64 250.0 633 32.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 7.7e-64 249.2 339 46.6
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 7.7e-64 249.2 619 35.2
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.9e-63 247.3 596 37.1
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.8e-63 246.9 571 35.4
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 5.0e-63 246.5 562 35.2
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 5.0e-63 246.5 635 36.4
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.1e-62 245.4 570 34.6
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.1e-62 245.4 599 36.1
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.4e-62 245.0 581 35.5
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.9e-62 244.6 566 36.0
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.9e-62 244.6 614 36.0
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.5e-62 244.2 611 35.8
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.2e-62 243.8 563 35.5
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 3.2e-62 243.8 602 38.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 3.2e-62 243.8 645 33.3
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 7.2e-62 242.7 353 45.9
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 9.4e-62 242.3 561 35.1
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 9.4e-62 242.3 678 33.0
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.6e-61 241.5 629 34.2
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.1e-61 241.1 577 39.2
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 2.1e-61 241.1 569 35.7
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 2.1e-61 241.1 635 33.7
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 4.6e-61 240.0 563 37.7
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 7.9e-61 239.2 592 35.8
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.0e-60 238.8 595 33.1
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.0e-60 238.8 619 35.9
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.4e-60 238.4 583 35.2
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.8e-60 238.0 602 34.9
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.8e-60 238.0 634 33.9
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 2.3e-60 237.7 685 34.3
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 3.9e-60 236.9 354 44.6
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 3.9e-60 236.9 692 32.8
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 8.8e-60 235.7 346 45.4
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 2.6e-59 234.2 685 32.4
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.3e-59 233.8 647 33.8
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 3.3e-59 233.8 654 33.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 3.3e-59 233.8 594 33.3
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 5.7e-59 233.0 642 34.4
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 7.4e-59 232.6 631 34.5
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 1.3e-58 231.9 696 32.2
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.7e-58 231.5 622 34.7
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.2e-58 231.1 627 34.0
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 6.3e-58 229.6 586 33.6
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.2e-58 229.2 621 33.8
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.1e-57 228.8 539 35.8
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 4.1e-57 226.9 587 34.1
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.3e-57 226.5 714 35.9
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 6.9e-57 226.1 592 36.1
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.0e-56 224.6 706 32.6
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 1.0e-55 222.2 627 33.5
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.3e-55 221.9 562 38.1
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.3e-55 221.9 653 35.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.2e-55 221.1 307 49.8
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 5.0e-55 219.9 566 38.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.0e-55 219.9 561 36.0
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 1.9e-54 218.0 610 32.8
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 4.2e-54 216.9 565 34.3
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 5.5e-54 216.5 603 32.7
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 5.5e-54 216.5 573 33.9
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 5.5e-54 216.5 592 32.6
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 5.5e-54 216.5 470 37.7
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 7.2e-54 216.1 607 32.6
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 7.2e-54 216.1 570 37.5
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 7.2e-54 216.1 621 33.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 7.2e-54 216.1 603 33.2
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.2e-53 215.3 647 31.7
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.1e-53 214.5 565 35.0
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 6.1e-53 213.0 551 34.8
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 1.0e-52 212.2 630 32.4
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.8e-52 211.5 614 33.4
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.0e-52 210.7 640 33.0
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.0e-51 208.0 624 30.9
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 5.7e-51 206.5 597 33.7
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.7e-51 206.5 619 32.3
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 5.7e-51 206.5 625 32.3
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 9.7e-51 205.7 595 33.6
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 9.7e-51 205.7 589 33.4
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 2.8e-50 204.1 579 33.0
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 1.1e-49 202.2 289 47.4
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 2.4e-49 201.1 577 33.1
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 3.1e-49 200.7 269 54.6
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.1e-49 200.7 517 36.6
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 4.1e-49 200.3 304 44.7
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 5.3e-49 199.9 484 36.6
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.5e-48 197.2 502 38.2
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 4.5e-48 196.8 604 32.3
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.7e-47 194.9 308 43.2
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.9e-47 194.1 599 32.9
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 1.5e-46 191.8 605 30.9
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.0e-44 185.7 592 35.1
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.2e-43 182.2 688 31.2
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 7.5e-43 179.5 660 29.8
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 7.5e-43 179.5 560 30.5
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 3.7e-42 177.2 626 29.4
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 8.2e-42 176.0 662 29.3
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-41 175.6 291 42.3
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.1e-41 175.6 291 42.3
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.2e-40 172.2 628 29.6
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.5e-38 165.2 237 46.0
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 2.5e-38 164.5 237 45.6
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.6e-37 161.8 406 34.2
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 4.7e-37 160.2 194 49.0
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 2.0e-35 154.8 318 38.1
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 2.0e-35 154.8 560 29.6
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 7.5e-35 152.9 560 30.2
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 1.1e-33 149.1 446 33.0
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 7.0e-33 146.4 270 38.9
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 9.1e-33 146.0 438 32.4
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 2.7e-32 144.4 627 28.2
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 6.5e-31 139.8 533 28.7
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.6e-29 134.0 312 37.8
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 2.3e-28 131.3 512 35.9
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 4.0e-28 130.6 407 31.4
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.4e-27 127.1 565 28.1
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 7.5e-27 126.3 331 29.3
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 8.3e-26 122.9 345 30.7
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 4.1e-25 120.6 268 36.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.6e-24 118.6 289 32.5
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 4.3e-22 110.5 217 28.6
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.2e-19 102.4 243 44.0
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.4e-19 100.5 570 25.4
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 4.1e-17 94.0 203 31.5
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 9.2e-17 92.8 134 50.0
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.8e-16 89.7 202 30.7
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 6.6e-15 86.7 82 61.0
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 2.5e-14 84.7 121 45.5
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 7.3e-14 83.2 134 35.8
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 2.1e-13 81.6 187 32.1
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 3.1e-12 77.8 91 51.6
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 2.0e-11 75.1 59 61.0
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 2.6e-11 74.7 224 35.3
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 7.5e-11 73.2 90 44.4
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-09 67.8 154 32.5
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.0e-07 61.2 74 45.9
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.9e-07 60.8 115 39.1
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 8.6e-07 59.7 61 54.1
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.1e-06 59.3 118 38.1
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 2.5e-06 58.2 175 29.1


User provided reference genes

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