Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G027180 Cucumis sativus L. HOM05D006548 ORTHO05D008064 9.8e-89 330.1 166 100.0
MELO3C015717.2 Cucumis melo HOM05D006548 ORTHO05D008064 5.2e-74 281.2 149 95.3
ClCG09G007890 Citrullus lanatus HOM05D006548 ORTHO05D008064 1.4e-63 246.5 149 83.2
Sed0004612 Sechium edule HOM05D006548 ORTHO05D008064 1.6e-59 233.0 149 81.2
Manes.13G055300 Manihot esculenta HOM05D006548 ORTHO05D008064 3.6e-51 205.3 151 70.9
Manes.12G059600 Manihot esculenta HOM05D006548 ORTHO05D008064 2.6e-49 199.1 151 66.9
PGR083G0463 Punica granatum HOM05D006548 ORTHO05D008064 2.2e-48 196.1 150 68.7
Phvul.008G137800 Phaseolus vulgaris HOM05D006548 ORTHO05D008064 8.4e-48 194.1 151 67.5
Gorai.007G160300 Gossypium raimondii HOM05D006548 ORTHO05D008064 1.9e-47 193.0 150 67.3
Gohir.A11G143200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.4e-47 192.6 150 67.3
CSS0021481 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 4.2e-47 191.8 151 67.5
Gohir.D11G149500 Gossypium hirsutum HOM05D006548 ORTHO05D008064 7.1e-47 191.0 150 67.3
TAR362G1118 Trochodendron aralioides HOM05D006548 ORTHO05D008064 7.1e-47 191.0 151 68.9
CiPaw.13G058400 Carya illinoinensis HOM05D006548 ORTHO05D008064 9.3e-47 190.7 138 69.6
Rhsim13G0053600 Rhododendron simsii HOM05D006548 ORTHO05D008064 9.3e-47 190.7 149 65.1
COL.COLO4_06931 Corchorus olitorius HOM05D006548 ORTHO05D008064 1.2e-46 190.3 150 66.0
Lj2P1115T39 Lonicera japonica HOM05D006548 ORTHO05D008064 1.6e-46 189.9 151 66.9
Prupe.8G188900 Prunus persica HOM05D006548 ORTHO05D008064 1.6e-46 189.9 152 66.4
Glyma.08G343100 Glycine max HOM05D006548 ORTHO05D008064 2.1e-46 189.5 151 65.6
Nn3g18599 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.7e-46 189.1 151 66.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 4.6e-46 188.3 142 66.2
RcHm_v2.0_Chr6g0282621 Rosa chinensis HOM05D006548 ORTHO05D008064 6.0e-46 188.0 149 65.1
vmacro02826 Vaccinium macrocarpon HOM05D006548 ORTHO05D008064 1.0e-45 187.2 148 64.9
VMungo1383G2587 Vigna mungo HOM05D006548 ORTHO05D008064 1.0e-45 187.2 151 66.9
Hma1.2p1_0161F.1_g071510 Hydrangea macrophylla HOM05D006548 ORTHO05D008064 1.7e-45 186.4 151 66.2
Potri.002G239000 Populus trichocarpa HOM05D006548 ORTHO05D008064 1.7e-45 186.4 151 64.2
MD10G1150500 Malus domestica HOM05D006548 ORTHO05D008064 2.3e-45 186.0 152 65.1
Thecc.01G209700 Theobroma cacao HOM05D006548 ORTHO05D008064 3.9e-45 185.3 150 65.3
FAN27G0042 Fragaria x ananassa HOM05D006548 ORTHO05D008064 5.1e-45 184.9 149 64.4
FAN27G0390 Fragaria x ananassa HOM05D006548 ORTHO05D008064 5.1e-45 184.9 149 64.4
FAN24G3284 Fragaria x ananassa HOM05D006548 ORTHO05D008064 1.1e-44 183.7 149 63.8
Nitab4.5_0011925g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.1e-44 183.7 150 64.0
FvH4_2g17650 Fragaria vesca HOM05D006548 ORTHO05D008064 1.5e-44 183.3 149 63.8
PSO017G5831 Papaver somniferum HOM05D006548 ORTHO05D008064 1.5e-44 183.3 150 65.3
CANSAT01G2941 Cannabis sativa HOM05D006548 ORTHO05D008064 3.3e-44 182.2 151 61.6
Glyma.18G153900 Glycine max HOM05D006548 ORTHO05D008064 3.3e-44 182.2 151 63.6
Ah.11g050830 Amaranthus hybridus HOM05D006548 ORTHO05D008064 4.3e-44 181.8 148 64.2
Peaxi162Scf00372g00041 Petunia axillaris HOM05D006548 ORTHO05D008064 4.3e-44 181.8 150 63.3
Atru.chr6.3534 Acer truncatum HOM05D006548 ORTHO05D008064 5.6e-44 181.4 152 62.5
Sabra02G0182000 Salix brachista HOM05D006548 ORTHO05D008064 5.6e-44 181.4 151 63.6
Aqoxy2G04054 Aquilegia oxysepala HOM05D006548 ORTHO05D008064 7.3e-44 181.0 150 63.3
CAN.G874.34 Capsicum annuum HOM05D006548 ORTHO05D008064 7.3e-44 181.0 150 64.0
Cc01_g16030 Coffea canephora HOM05D006548 ORTHO05D008064 1.3e-43 180.3 151 63.6
Nitab4.5_0002311g0090 Nicotiana tabacum HOM05D006548 ORTHO05D008064 1.6e-43 179.9 151 63.6
Nn4g25121 Nelumbo nucifera HOM05D006548 ORTHO05D008064 2.1e-43 179.5 151 63.6
PSO675G8742 Papaver somniferum HOM05D006548 ORTHO05D008064 2.1e-43 179.5 150 66.0
Psat3g151760 Pisum sativum HOM05D006548 ORTHO05D008064 2.1e-43 179.5 150 62.0
Ciclev10017030m.g Citrus clementina HOM05D006548 ORTHO05D008064 2.8e-43 179.1 151 62.9
Lalb_Chr01g0021941 Lupinus albus HOM05D006548 ORTHO05D008064 2.8e-43 179.1 151 63.6
Nitab4.5_0001348g0010 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.8e-43 179.1 151 63.6
Nitab4.5_0007144g0040 Nicotiana tabacum HOM05D006548 ORTHO05D008064 2.8e-43 179.1 151 63.6
Sopen06g034400 Solanum pennellii HOM05D006548 ORTHO05D008064 2.8e-43 179.1 149 63.8
MSTRG.17967 Avicennia marina HOM05D006548 ORTHO05D008064 3.6e-43 178.7 151 60.9
Gohir.D07G202600 Gossypium hirsutum HOM05D006548 ORTHO05D008064 3.6e-43 178.7 150 63.3
Gorai.001G228000 Gossypium raimondii HOM05D006548 ORTHO05D008064 3.6e-43 178.7 150 63.3
Cfa010631 Carpinus fangiana HOM05D006548 ORTHO05D008064 4.8e-43 178.3 147 62.6
Potri.014G177100 Populus trichocarpa HOM05D006548 ORTHO05D008064 4.8e-43 178.3 151 61.6
Oeu051515.1 Olea europaea HOM05D006548 ORTHO05D008064 6.2e-43 177.9 150 62.7
Lj1g0008534 Lotus japonicus HOM05D006548 ORTHO05D008064 8.1e-43 177.6 151 60.9
Sabra14G0135300 Salix brachista HOM05D006548 ORTHO05D008064 8.1e-43 177.6 151 60.9
PGSC0003DMG400027686 Solanum tuberosum HOM05D006548 ORTHO05D008064 1.1e-42 177.2 149 62.4
CSS0032607 Camellia sinensis var. sinensis HOM05D006548 ORTHO05D008064 1.4e-42 176.8 150 61.3
THA.LOC104819003 Tarenaya hassleriana HOM05D006548 ORTHO05D008064 1.4e-42 176.8 150 60.7
BolC5t34638H Brassica oleracea HOM05D006548 ORTHO05D008064 4.0e-42 175.3 149 62.4
BcaC05g29539 Brassica carinata HOM05D006548 ORTHO05D008064 5.3e-42 174.9 149 63.1
C05p59840 Brassica napus HOM05D006548 ORTHO05D008064 5.3e-42 174.9 149 62.4
MBI08_g14954_MAGBIO Magnolia biondii HOM05D006659 ORTHO05D008064 5.3e-42 174.9 150 62.7
HanXRQChr08g0231851 Helianthus annuus HOM05D006548 ORTHO05D008064 6.9e-42 174.5 150 62.0
TPR.G26806 Trifolium pratense HOM05D006548 ORTHO05D008064 1.2e-41 173.7 117 70.9
A05p40730 Brassica napus HOM05D006548 ORTHO05D008064 2.0e-41 172.9 149 61.7
BraA05t22804Z Brassica rapa HOM05D006548 ORTHO05D008064 2.0e-41 172.9 149 61.7
Sp3g06390 Schrenkiella parvula HOM05D006548 ORTHO05D008064 2.6e-41 172.6 146 60.3
HPP92_002744 Vanilla planifolia HOM05D006548 ORTHO05D008064 2.6e-41 172.6 149 60.4
arahy.Tifrunner.gnm1.ann1.C7NXRU Arachis hypogaea HOM05D006548 ORTHO05D008064 3.4e-41 172.2 151 60.9
arahy.Tifrunner.gnm1.ann1.I0E60T Arachis hypogaea HOM05D006548 ORTHO05D008064 3.4e-41 172.2 152 62.5
Duzib138G0849 Durio zibethinus HOM05D006548 ORTHO05D008064 3.4e-41 172.2 150 62.0
Sc05g0001680 Simmondsia chinensis HOM05D006548 ORTHO05D008064 4.5e-41 171.8 150 60.7
Thhalv10021677m.g Eutrema salsugineum HOM05D006548 ORTHO05D008064 5.8e-41 171.4 146 61.0
ATR0824G029 Amborella trichopoda HOM05D006548 ORTHO05D008064 1.3e-40 170.2 119 67.2
ECA247G0922 Erigeron canadensis HOM05D006548 ORTHO05D008064 1.3e-40 170.2 149 59.1
Lalb_Chr03g0040981 Lupinus albus HOM05D006548 ORTHO05D008064 1.3e-40 170.2 150 60.7
CARHR082130 Cardamine hirsuta HOM05D006548 ORTHO05D008064 2.2e-40 169.5 147 59.9
Duzib211G0675 Durio zibethinus HOM05D006548 ORTHO05D008064 2.2e-40 169.5 150 60.7
Carub.0003s0703 Capsella rubella HOM05D006548 ORTHO05D008064 2.9e-40 169.1 139 61.2
Haze_03573 Corylus avellana HOM05D006548 ORTHO05D008064 6.4e-40 167.9 149 61.1
PGSC0003DMG400020639 Solanum tuberosum HOM05D006548 ORTHO05D008064 6.4e-40 167.9 105 73.3
AL3G18800 Arabidopsis lyrata HOM05D006548 ORTHO05D008064 1.1e-39 167.2 139 60.4
AT3G07480 Arabidopsis thaliana HOM05D006548 ORTHO05D008064 1.1e-39 167.2 139 60.4
Solyc06g007630.1 Solanum lycopersicum HOM05D006548 ORTHO05D008064 1.1e-39 167.2 105 73.3
Sopen06g002520 Solanum pennellii HOM05D006548 ORTHO05D008064 1.1e-39 167.2 105 73.3
SGA_v2.0_scaffold95G28706 Striga asiatica HOM05D006548 ORTHO05D008064 1.4e-39 166.8 151 56.3
AUR62028648 Chenopodium quinoa HOM05D006548 ORTHO05D008064 2.4e-39 166.0 149 57.7
Ca_07442_v3 Cicer arietinum L. HOM05D006548 ORTHO05D008064 2.4e-39 166.0 149 59.1
BcaB03g14699 Brassica carinata HOM05D006548 ORTHO05D008064 3.2e-39 165.6 138 62.3
QL09p047049 Quercus lobata HOM05D006548 ORTHO05D008064 9.3e-39 164.1 107 72.0
TWI18G0731 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 2.1e-38 162.9 152 57.2
DCAR_030798 Daucus carota HOM05D006548 ORTHO05D008064 3.5e-38 162.2 149 53.7
Medtr7g051230 Medicago truncatula HOM05D006548 ORTHO05D008064 3.5e-38 162.2 141 58.9
Aa31LG5G18040 Aethionema arabicum HOM05D006548 ORTHO05D008064 4.6e-38 161.8 140 59.3
EL10Ac5g10597 Beta vulgaris HOM05D006548 ORTHO05D008064 4.6e-38 161.8 145 57.9
Migut.N00670 Erythranthe guttata HOM05D006548 ORTHO05D008064 6.0e-38 161.4 151 56.3
TWI36G0698 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 6.0e-38 161.4 152 57.2
TWI75G1339 Tripterygium wilfordii HOM05D006548 ORTHO05D008064 1.8e-37 159.8 154 58.4
unitig_61.g26345 Utricularia gibba HOM05D006548 ORTHO05D008064 1.9e-36 156.4 151 53.6
Os09g0514600 Oryza sativa ssp. japonica HOM05D006548 ORTHO05D008064 2.5e-36 156.0 140 54.3
Zm00001eb102720 Zea mays HOM05D006548 ORTHO05D008064 7.4e-36 154.5 140 54.3
GSVIVG01003797001 Vitis vinifera HOM05D006548 ORTHO05D008064 9.6e-36 154.1 105 62.9
Zm00001eb318350 Zea mays HOM05D006548 ORTHO05D008064 4.8e-35 151.8 145 53.8
Lsat_1_v5_gn_9_16480 Lactuca sativa HOM05D006548 ORTHO05D008064 2.6e-33 146.0 156 57.1
Gohir.A07G196200 Gossypium hirsutum HOM05D006548 ORTHO05D008064 2.7e-30 136.0 83 74.7
Pp3c2_31000 Physcomitrium patens HOM05D006548 ORTHO05D008064 6.2e-27 124.8 149 44.3
Ciclev10013747m.g Citrus clementina HOM05D006548 ORTHO05D008064 1.4e-26 123.6 83 69.9
AagrBONN_evm.TU.Sc2ySwM_362.984 Anthoceros agrestis HOM05D006548 ORTHO05D008064 2.0e-25 119.8 126 47.6
BcaC05g29538 Brassica carinata HOM05D006548 ORTHO05D008064 1.3e-24 117.1 113 59.3
CDE12G0850 Ceratophyllum demersum HOM05D006548 ORTHO05D008064 6.9e-18 94.7 60 71.7
Mapoly0085s0036 Marchantia polymorpha HOM05D006548 ORTHO05D008064 1.2e-17 94.0 126 41.3
C03p67920 Brassica napus HOM05D006548 ORTHO05D008064 3.6e-14 82.4 76 52.6
BcaC01g02172 Brassica carinata HOM05D006548 ORTHO05D008064 1.8e-13 80.1 76 51.3
SEGI_16405 Sequoiadendron giganteum HOM05D002489 ORTHO05D002653 1.8e-13 80.1 101 48.5
Actinidia30005 Actinidia chinensis HOM05D006548 ORTHO05D008064 2.5e-12 76.3 78 61.5
CBR_g34314 Chara braunii HOM05D006548 ORTHO05D008064 4.7e-06 55.5 107 32.7


User provided reference genes

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