Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 1.9e-69 265.8 138 100.0
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 6.1e-44 181.0 118 82.2
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 7.5e-34 147.5 121 70.2
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 1.8e-32 142.9 121 64.5
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 4.0e-27 125.2 96 62.5
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 6.8e-27 124.4 100 59.0
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 1.2e-26 123.6 121 55.4
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 5.7e-26 121.3 101 59.4
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 7.5e-26 120.9 123 53.7
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 9.8e-26 120.6 94 61.7
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 9.8e-26 120.6 101 60.4
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 1.7e-25 119.8 96 59.4
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 2.9e-25 119.0 98 62.2
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 2.9e-25 119.0 121 52.9
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 3.7e-25 118.6 93 63.4
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 4.9e-25 118.2 99 59.6
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 6.3e-25 117.9 99 59.6
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 8.3e-25 117.5 94 55.3
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.1e-24 117.1 96 60.4
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 1.4e-24 116.7 97 63.9
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.4e-24 116.7 99 58.6
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 1.8e-24 116.3 50 98.0
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 2.4e-24 115.9 70 74.3
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 2.4e-24 115.9 89 64.0
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 2.4e-24 115.9 94 57.4
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 3.2e-24 115.5 63 81.0
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 3.2e-24 115.5 96 60.4
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 4.1e-24 115.2 94 61.7
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 4.1e-24 115.2 59 83.1
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.1e-24 115.2 59 83.1
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.1e-24 115.2 59 83.1
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.1e-24 115.2 99 57.6
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 4.1e-24 115.2 97 59.8
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 4.1e-24 115.2 97 60.8
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 5.4e-24 114.8 100 58.0
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 5.4e-24 114.8 62 80.6
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 5.4e-24 114.8 54 88.9
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 5.4e-24 114.8 98 59.2
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 7.0e-24 114.4 68 75.0
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 7.0e-24 114.4 103 55.3
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 9.2e-24 114.0 99 61.6
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 9.2e-24 114.0 97 56.7
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 9.2e-24 114.0 52 92.3
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 9.2e-24 114.0 98 56.1
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.2e-23 113.6 97 57.7
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 1.2e-23 113.6 97 55.7
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.2e-23 113.6 98 56.1
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 1.2e-23 113.6 98 57.1
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 1.6e-23 113.2 71 66.2
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 1.6e-23 113.2 71 66.2
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 1.6e-23 113.2 71 66.2
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 1.6e-23 113.2 49 95.9
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.6e-23 113.2 97 56.7
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 1.6e-23 113.2 97 57.7
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.6e-23 113.2 60 80.0
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 1.6e-23 113.2 74 71.6
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 2.0e-23 112.8 98 60.2
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 2.0e-23 112.8 63 81.0
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.7e-23 112.5 52 90.4
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.7e-23 112.5 52 90.4
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 2.7e-23 112.5 52 90.4
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 3.5e-23 112.1 57 86.0
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 3.5e-23 112.1 57 86.0
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 3.5e-23 112.1 57 86.0
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 3.5e-23 112.1 57 86.0
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 3.5e-23 112.1 57 86.0
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 3.5e-23 112.1 113 56.6
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.5e-23 112.1 59 81.4
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 3.5e-23 112.1 52 90.4
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 3.5e-23 112.1 104 51.9
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 4.6e-23 111.7 49 95.9
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 4.6e-23 111.7 49 95.9
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 4.6e-23 111.7 123 50.4
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 4.6e-23 111.7 59 79.7
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 4.6e-23 111.7 54 87.0
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 4.6e-23 111.7 49 95.9
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 4.6e-23 111.7 78 65.4
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 5.9e-23 111.3 94 56.4
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 5.9e-23 111.3 59 81.4
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 1.0e-22 110.5 49 93.9
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 1.0e-22 110.5 57 82.5
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 1.0e-22 110.5 104 51.0
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 1.3e-22 110.2 96 58.3
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 1.7e-22 109.8 51 88.2
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 2.3e-22 109.4 49 91.8
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 2.3e-22 109.4 58 77.6
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 3.9e-22 108.6 92 57.6
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 3.9e-22 108.6 55 81.8
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 5.0e-22 108.2 57 78.9
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 8.6e-22 107.5 52 86.5
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 8.6e-22 107.5 53 81.1
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 8.6e-22 107.5 49 87.8
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 1.1e-21 107.1 49 85.7
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 2.5e-21 105.9 49 85.7
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 2.5e-21 105.9 56 75.0
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 3.3e-21 105.5 67 70.1
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 3.3e-21 105.5 76 61.8
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 4.3e-21 105.1 49 85.7
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 4.3e-21 105.1 48 87.5
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 5.6e-21 104.8 57 77.2
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 9.5e-21 104.0 49 87.8
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 1.6e-20 103.2 49 85.7
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 3.6e-20 102.1 46 84.8
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 4.7e-20 101.7 49 83.7
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 4.7e-20 101.7 74 64.9
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 6.8e-19 97.8 49 83.7
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 6.8e-19 97.8 89 53.9
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 6.8e-19 97.8 49 77.6
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 6.8e-19 97.8 49 77.6
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 2.6e-18 95.9 46 82.6
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 1.7e-17 93.2 85 49.4
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 2.2e-17 92.8 46 80.4
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 3.2e-16 89.0 49 73.5
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 1.6e-15 86.7 49 67.3
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 2.0e-15 86.3 52 75.0
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 3.9e-14 82.0 49 67.3


User provided reference genes

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