Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.7e-310 1068.5 550 100.0
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 5.6e-298 1026.9 550 96.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.5e-290 1002.3 550 93.5
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 5.8e-271 937.2 552 88.2
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.5e-210 736.5 554 72.2
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.2e-209 732.6 555 70.8
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 2.4e-208 729.2 556 70.0
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 3.1e-208 728.8 555 70.5
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 6.5e-206 721.1 561 70.4
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 6.5e-206 721.1 555 71.4
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.5e-205 719.9 556 70.1
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 4.2e-205 718.4 556 69.8
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 8.0e-204 714.1 566 67.5
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.0e-203 713.8 556 70.1
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 4.0e-203 711.8 555 69.2
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 6.8e-203 711.1 555 69.7
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.6e-202 709.1 558 71.1
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 3.4e-202 708.8 557 69.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.4e-202 708.8 555 69.0
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 4.4e-202 708.4 557 69.1
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 7.5e-202 707.6 558 71.0
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 9.8e-202 707.2 559 68.7
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.3e-201 706.8 558 70.4
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.8e-201 705.7 555 70.3
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.1e-200 702.2 558 70.4
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 4.1e-200 701.8 555 69.7
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 7.0e-200 701.0 556 69.4
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.6e-199 699.9 559 69.8
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.5e-199 698.7 558 69.2
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 4.5e-199 698.4 554 68.8
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 8.6e-198 694.1 559 68.2
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 1.0e-195 687.2 559 67.1
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 6.3e-193 677.9 561 67.2
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.6e-191 673.3 558 65.6
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.0e-191 672.9 560 67.3
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 3.5e-191 672.2 560 66.4
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 5.9e-191 671.4 553 66.9
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 5.6e-189 664.8 562 65.5
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.6e-188 663.3 608 61.2
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.0e-187 660.6 561 65.4
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.4e-187 660.2 518 69.5
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 2.2e-185 652.9 635 59.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 8.3e-185 651.0 554 65.5
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 3.5e-183 645.6 558 66.8
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 4.6e-183 645.2 555 65.6
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.9e-182 642.1 552 65.0
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.5e-181 640.2 552 64.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 2.5e-181 639.4 551 64.6
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 4.0e-179 632.1 553 65.1
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 5.2e-179 631.7 550 65.5
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 8.9e-179 630.9 552 64.3
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.5e-178 630.2 551 64.2
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 2.6e-178 629.4 556 64.2
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 9.8e-178 627.5 555 63.8
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.3e-177 627.1 558 66.1
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.3e-177 627.1 566 62.9
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.9e-176 623.2 571 62.5
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.9e-176 623.2 551 64.1
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 4.1e-176 622.1 560 63.4
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 4.1e-176 622.1 566 62.4
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 5.4e-176 621.7 556 62.9
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 7.0e-176 621.3 560 62.1
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 9.2e-176 620.9 556 63.1
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.0e-175 619.8 610 59.5
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.7e-175 619.4 537 65.4
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 3.5e-175 619.0 549 63.2
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 3.0e-174 615.9 588 60.5
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 3.9e-174 615.5 556 62.2
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 1.1e-173 614.0 562 64.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 5.6e-173 611.7 561 64.3
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.2e-171 605.1 579 60.4
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.6e-170 602.8 516 64.5
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.4e-170 602.1 579 60.6
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.4e-170 602.1 562 61.7
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 7.1e-168 594.7 571 62.5
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 7.8e-167 591.3 471 68.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 8.1e-164 581.3 555 61.6
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.4e-163 579.7 572 60.7
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.3e-161 573.9 585 57.8
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 4.1e-160 568.9 574 59.9
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 4.1e-160 568.9 564 60.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 9.2e-160 567.8 694 51.0
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.5e-159 565.8 693 50.8
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.5e-159 565.8 575 60.5
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.0e-158 564.3 566 58.7
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.7e-158 563.5 579 59.9
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 3.9e-158 562.4 573 58.5
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.1e-158 562.0 570 60.0
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 5.1e-158 562.0 575 59.8
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 4.7e-156 555.4 574 58.4
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 6.2e-156 555.1 566 58.5
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.1e-155 554.3 472 64.6
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.2e-154 550.8 570 59.3
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 8.4e-153 544.7 639 52.7
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 4.2e-152 542.3 575 57.6
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 1.8e-147 526.9 560 56.6
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 5.3e-147 525.4 534 58.2
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 1.9e-144 516.9 556 54.5
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 7.1e-144 515.0 565 57.3
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 2.7e-143 513.1 453 64.5
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 2.3e-142 510.0 580 57.1
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 3.9e-142 509.2 580 57.1
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 3.9e-142 509.2 580 57.1
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.3e-140 504.2 578 55.5
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 1.6e-140 503.8 578 55.5
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 2.4e-136 490.0 579 52.2
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 9.0e-131 471.5 583 50.8
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 1.7e-129 467.2 430 63.0
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 3.8e-129 466.1 567 52.2
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.2e-124 450.3 415 62.4
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 8.8e-118 428.3 566 49.8
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.7e-116 424.1 516 51.4
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 6.5e-113 412.1 386 60.1
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.1e-112 411.4 549 47.0
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 1.1e-88 331.6 433 49.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.6e-87 327.8 568 42.4
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 7.5e-85 318.9 566 40.1
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 3.4e-77 293.5 313 57.2
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.1e-72 278.5 496 41.3
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 5.4e-67 259.6 357 45.1
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 6.0e-50 203.0 261 44.8
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 1.1e-43 182.2 477 34.6
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.4e-35 155.2 187 55.1
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 9.3e-27 125.9 86 74.4
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 8.7e-25 119.4 87 70.1
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.8e-23 114.4 112 58.9
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 7.6e-21 106.3 84 67.9
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.0e-17 94.4 234 29.1
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.1e-16 92.4 234 31.2
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 7.4e-16 89.7 234 31.2
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 8.2e-15 86.3 150 40.7
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.4e-14 85.5 175 34.3
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.3e-12 79.0 72 58.3
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.8e-09 68.6 60 66.7


User provided reference genes

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