Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 1.1e-88 330.1 179 100.0
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 9.3e-77 290.4 179 89.4
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 7.1e-69 264.2 185 80.5
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 3.3e-58 228.8 184 70.7
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 5.3e-32 141.7 196 49.5
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 3.2e-29 132.5 183 49.7
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 3.0e-27 125.9 170 51.8
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 5.2e-27 125.2 148 54.1
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 6.7e-27 124.8 213 45.1
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 2.0e-26 123.2 152 54.6
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 2.6e-26 122.9 180 46.7
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 2.6e-26 122.9 190 42.6
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 3.3e-26 122.5 158 49.4
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 3.3e-26 122.5 191 45.5
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 4.4e-26 122.1 158 50.0
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 5.7e-26 121.7 123 58.5
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 2.2e-25 119.8 155 50.3
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 2.8e-25 119.4 178 46.6
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 2.8e-25 119.4 125 58.4
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 3.7e-25 119.0 152 49.3
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 3.7e-25 119.0 125 55.2
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 8.2e-25 117.9 146 52.7
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 8.2e-25 117.9 157 51.0
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 8.2e-25 117.9 114 60.5
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 8.2e-25 117.9 188 44.7
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 1.1e-24 117.5 111 60.4
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 1.4e-24 117.1 109 60.6
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.4e-24 117.1 126 56.3
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 1.4e-24 117.1 145 50.3
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 1.8e-24 116.7 140 50.7
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 2.4e-24 116.3 137 55.5
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 3.1e-24 115.9 160 48.1
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 4.1e-24 115.5 109 63.3
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 4.1e-24 115.5 137 51.8
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 4.1e-24 115.5 152 50.0
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 5.3e-24 115.2 116 57.8
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 5.3e-24 115.2 137 51.8
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 7.0e-24 114.8 138 52.9
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 9.1e-24 114.4 171 49.1
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 9.1e-24 114.4 162 48.8
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 9.1e-24 114.4 205 42.4
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 1.2e-23 114.0 94 64.9
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 1.2e-23 114.0 133 57.9
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 1.6e-23 113.6 202 43.1
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 1.6e-23 113.6 148 50.0
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 1.6e-23 113.6 106 60.4
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 2.0e-23 113.2 138 52.9
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 2.0e-23 113.2 209 43.1
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 2.0e-23 113.2 136 50.7
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 2.6e-23 112.8 135 53.3
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 2.6e-23 112.8 101 62.4
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 2.6e-23 112.8 192 44.3
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 3.5e-23 112.5 158 48.1
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.5e-23 112.5 152 49.3
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 3.5e-23 112.5 111 58.6
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 3.5e-23 112.5 165 44.2
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 4.5e-23 112.1 177 43.5
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 4.5e-23 112.1 122 51.6
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 5.9e-23 111.7 121 53.7
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 5.9e-23 111.7 115 62.6
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 5.9e-23 111.7 175 45.1
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 7.7e-23 111.3 169 47.3
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 7.7e-23 111.3 203 39.4
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 1.0e-22 110.9 139 53.2
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.0e-22 110.9 172 44.8
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.7e-22 110.2 145 51.0
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 2.2e-22 109.8 177 44.6
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 2.9e-22 109.4 175 48.0
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 3.8e-22 109.0 184 43.5
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 5.0e-22 108.6 126 54.8
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 5.0e-22 108.6 172 46.5
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 6.5e-22 108.2 161 45.3
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 6.5e-22 108.2 126 54.0
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 6.5e-22 108.2 200 40.5
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.1e-21 107.5 184 44.6
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 1.5e-21 107.1 140 50.7
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 1.5e-21 107.1 165 46.1
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 3.2e-21 105.9 184 45.1
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 3.2e-21 105.9 186 44.1
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 4.2e-21 105.5 155 45.2
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 4.2e-21 105.5 184 45.7
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 4.2e-21 105.5 184 45.7
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 9.4e-21 104.4 103 65.0
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 9.4e-21 104.4 119 52.1
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 1.2e-20 104.0 157 44.6
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 1.2e-20 104.0 174 44.3
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 1.6e-20 103.6 101 57.4
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 2.7e-20 102.8 115 53.0
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 2.7e-20 102.8 163 43.6
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 4.7e-20 102.1 155 43.9
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 4.7e-20 102.1 163 43.6
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 4.7e-20 102.1 145 44.1
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 6.1e-20 101.7 155 48.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 8.0e-20 101.3 174 42.5
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 2.3e-19 99.8 156 44.9
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 3.0e-19 99.4 131 48.9
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 5.2e-19 98.6 163 42.3
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 6.8e-19 98.2 110 52.7
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 6.8e-19 98.2 184 41.3
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 1.2e-18 97.4 188 42.6
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 1.5e-18 97.1 96 55.2
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 2.6e-18 96.3 102 52.0
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 3.4e-18 95.9 150 43.3
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 1.4e-16 90.5 125 46.4
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 3.1e-16 89.4 163 39.9
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 7.0e-16 88.2 161 44.1
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.2e-15 87.4 69 68.1
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.0e-14 84.3 89 55.1
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 2.9e-14 82.8 124 46.0
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 3.8e-14 82.4 149 40.3
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 5.0e-14 82.0 193 39.4
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 6.5e-14 81.6 112 44.6
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 1.1e-13 80.9 119 45.4
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 1.1e-13 80.9 86 54.7
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 4.2e-13 79.0 70 57.1
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 9.4e-13 77.8 115 44.3
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 1.6e-12 77.0 167 41.3
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 1.6e-12 77.0 123 39.8
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 1.6e-12 77.0 186 37.1
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 2.3e-11 73.2 59 64.4
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 5.2e-11 72.0 112 43.8
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 2.0e-10 70.1 114 42.1
Pp3c5_25810 Physcomitrium patens HOM05D005884 ORTHO05D007282 9.8e-10 67.8 116 37.9
MCO02G464 Micromonas commoda HOM05D005884 ORTHO05D007282 4.1e-08 62.4 64 45.3
Gohir.A03G143925 Gossypium hirsutum HOM05D005884 ORTHO05D007282 2.3e-06 56.6 81 45.7
Gorai.001G128300 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.3e-06 56.6 81 45.7
Gorai.001G116800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.9e-06 56.2 93 40.9
Gorai.002G226800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.9e-06 56.2 93 40.9


User provided reference genes

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