Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 3.2e-84 315.1 163 100.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 4.2e-76 288.1 158 94.3
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 5.3e-71 271.2 158 88.0
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.1e-65 253.4 158 81.6
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 5.5e-52 208.0 160 66.9
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 3.6e-51 205.3 159 67.9
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.1e-49 200.3 180 62.2
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.7e-49 198.0 160 65.0
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.7e-48 196.4 160 63.8
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.8e-48 195.7 160 64.4
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 4.8e-48 194.9 158 65.2
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 6.3e-48 194.5 180 58.9
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.4e-47 193.4 162 63.6
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 5.3e-47 191.4 180 57.8
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.2e-46 190.3 180 57.2
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 7.7e-46 187.6 159 62.3
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.0e-45 187.2 160 61.2
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.3e-45 186.8 160 60.6
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.3e-45 186.8 160 61.2
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 1.3e-45 186.8 159 60.4
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.2e-45 186.0 180 56.1
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 2.2e-45 186.0 181 55.2
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 8.5e-45 184.1 162 63.6
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.5e-44 183.3 162 60.5
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.5e-44 182.6 178 56.2
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 2.5e-44 182.6 162 60.5
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 2.5e-44 182.6 159 64.8
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.5e-44 181.4 162 61.7
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 7.2e-44 181.0 145 62.8
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 7.2e-44 181.0 163 62.6
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 9.4e-44 180.6 160 60.0
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.2e-43 180.3 162 61.7
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-43 180.3 162 61.1
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.2e-43 180.3 152 63.8
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 1.2e-43 180.3 181 54.1
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.6e-43 179.9 160 61.2
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.1e-43 179.5 162 61.7
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 2.7e-43 179.1 159 59.7
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 3.6e-43 178.7 160 60.6
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 8.0e-43 177.6 159 59.1
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 8.0e-43 177.6 160 58.8
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.0e-42 177.2 162 61.1
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 1.8e-42 176.4 164 58.5
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 3.0e-42 175.6 160 58.8
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 4.0e-42 175.3 168 58.3
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 4.0e-42 175.3 160 61.9
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 5.2e-42 174.9 159 60.4
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-41 172.9 153 62.7
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.4e-41 172.2 159 57.9
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 4.4e-41 171.8 159 59.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.4e-41 171.8 162 59.3
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 7.5e-41 171.0 158 60.8
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.7e-40 169.9 170 55.3
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 8.3e-40 167.5 165 58.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 1.8e-39 166.4 164 58.5
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.8e-39 166.4 163 57.1
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 2.4e-39 166.0 151 59.6
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 5.3e-39 164.9 160 56.2
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 2.7e-38 162.5 161 56.5
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 3.5e-38 162.2 163 57.1
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 1.0e-37 160.6 148 58.1
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 2.2e-37 159.5 157 56.7
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 2.9e-37 159.1 152 59.9
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.8e-37 158.7 147 59.2
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.8e-37 158.7 147 59.2
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 6.5e-37 157.9 152 59.2
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 3.2e-36 155.6 157 55.4
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 5.5e-36 154.8 161 55.9
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 9.4e-36 154.1 171 53.2
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 4.7e-35 151.8 164 52.4
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 6.1e-35 151.4 177 50.3
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.4e-34 150.2 171 55.0
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.4e-34 150.2 162 53.7
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.8e-34 149.8 177 52.0
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.3e-34 149.4 167 55.1
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.0e-34 149.1 167 55.1
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.5e-33 146.7 147 55.1
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 4.4e-33 145.2 162 51.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 5.7e-33 144.8 192 46.9
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.7e-32 143.3 164 52.4
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 1.7e-32 143.3 185 51.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 6.3e-32 141.4 118 61.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 1.4e-31 140.2 160 50.6
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 2.4e-31 139.4 193 46.1
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 7.0e-31 137.9 129 58.9
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.6e-30 136.7 169 48.5
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 2.7e-30 136.0 143 53.8
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.3e-29 133.7 126 59.5
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.7e-29 133.3 128 57.8
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 2.3e-29 132.9 131 55.0
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 3.8e-29 132.1 160 48.8
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 6.6e-29 131.3 112 61.6
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 5.5e-28 128.3 133 50.4
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.2e-27 127.1 129 53.5
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 2.1e-27 126.3 117 59.8
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 3.0e-26 122.5 126 53.2
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.5e-25 120.2 125 55.2
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 3.9e-21 105.5 160 45.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 6.6e-21 104.8 78 65.4
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.2e-19 100.5 110 48.2
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 4.7e-19 98.6 75 65.3
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.4e-18 97.1 83 60.2
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.8e-18 96.7 115 49.6
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 5.8e-17 91.7 102 48.0
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 6.4e-16 88.2 85 55.3
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 4.1e-15 85.5 86 52.3
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 3.3e-12 75.9 93 47.3
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 7.3e-12 74.7 108 44.4
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 7.3e-12 74.7 79 49.4
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 3.6e-11 72.4 102 43.1
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 3.4e-09 65.9 59 54.2
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 4.4e-09 65.5 59 55.9
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.8e-09 64.3 59 54.2
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 9.8e-09 64.3 59 54.2
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.7e-08 62.4 59 52.5
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 2.4e-07 59.7 63 50.8
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 3.2e-07 59.3 155 30.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.2e-07 59.3 54 50.0


User provided reference genes

Program Settings