Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 5.9e-250 867.1 443 100.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.9e-243 845.5 443 97.1
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 2.8e-215 751.9 428 91.1
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 5.4e-203 711.1 450 82.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 8.8e-169 597.4 447 70.2
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 6.3e-167 591.3 447 69.1
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-166 590.1 447 68.7
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-166 590.1 447 69.1
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.9e-163 579.7 436 68.3
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.1e-162 574.7 445 67.4
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.3e-161 572.8 448 69.2
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 8.8e-161 570.9 456 66.9
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 3.3e-160 568.9 444 67.8
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.1e-158 563.9 446 67.7
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.4e-158 563.5 444 68.0
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.1e-158 562.0 446 65.2
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 5.3e-158 561.6 448 65.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 5.3e-158 561.6 468 64.5
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 7.0e-158 561.2 447 66.2
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 7.0e-158 561.2 441 67.3
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.2e-157 560.5 443 66.6
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.8e-156 555.4 409 69.7
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 8.0e-154 547.7 449 64.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 8.0e-154 547.7 426 68.5
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 2.3e-153 546.2 474 61.8
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 5.7e-152 541.6 444 66.2
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.7e-151 540.0 444 64.0
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.2e-151 539.7 465 62.2
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.2e-151 539.7 447 63.8
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.3e-151 537.7 468 61.1
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.8e-150 536.6 442 64.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.8e-150 536.6 458 63.3
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 3.1e-150 535.8 443 64.6
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 4.1e-150 535.4 432 65.7
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 7.0e-150 534.6 442 64.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.0e-149 533.1 446 63.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.7e-149 532.7 401 68.8
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 4.5e-149 531.9 443 65.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.7e-148 530.0 458 63.1
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.5e-148 527.7 436 63.8
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.9e-147 526.6 413 68.3
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 4.2e-147 525.4 417 65.7
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.2e-147 524.6 440 62.7
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 7.2e-147 524.6 420 65.2
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.1e-146 523.1 444 61.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.6e-146 522.3 439 63.8
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.4e-145 520.4 420 66.7
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.8e-145 520.0 435 62.8
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.0e-145 519.2 441 62.4
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 8.8e-145 517.7 416 65.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.2e-144 517.3 412 65.8
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 7.5e-144 514.6 440 61.8
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 9.8e-144 514.2 418 64.4
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.3e-143 513.8 368 71.7
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 6.3e-143 511.5 370 71.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 8.3e-143 511.1 444 61.9
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.1e-142 510.8 417 64.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.1e-142 509.2 417 64.5
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 9.1e-142 507.7 445 61.1
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.2e-141 507.3 415 65.1
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.7e-141 506.1 448 59.8
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.0e-140 504.2 403 65.5
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 3.8e-140 502.3 441 60.3
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.5e-139 500.4 382 68.8
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.9e-139 500.0 446 60.3
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.5e-139 498.4 440 60.0
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.2e-138 497.3 458 58.1
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 2.1e-138 496.5 351 72.1
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 8.0e-138 494.6 324 75.3
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.0e-137 494.2 451 60.5
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.4e-137 493.8 444 58.8
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.4e-137 493.8 445 60.2
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 4.0e-137 492.3 412 62.1
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.0e-136 490.0 414 63.0
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 9.8e-136 487.6 502 54.2
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.7e-135 485.7 455 56.9
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.2e-134 482.6 474 55.1
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 5.4e-134 481.9 466 58.2
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 9.2e-134 481.1 405 61.5
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.6e-133 480.3 484 57.9
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-132 477.6 439 61.3
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.0e-132 477.6 448 57.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.9e-132 476.1 419 60.6
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 5.0e-132 475.3 445 55.5
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 6.6e-132 474.9 416 60.8
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.1e-131 474.2 324 72.5
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.9e-131 473.4 379 66.0
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.3e-131 472.2 446 56.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 4.3e-131 472.2 399 62.4
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 7.3e-131 471.5 413 61.0
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 8.0e-130 468.0 366 67.2
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.8e-129 466.8 451 56.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 8.9e-129 464.5 440 57.7
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 1.2e-128 464.2 454 55.3
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.5e-128 463.8 456 54.8
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.6e-128 463.0 439 57.6
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-128 463.0 451 56.1
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.6e-128 463.0 394 61.2
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 2.2e-127 459.9 416 58.4
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.2e-127 459.9 456 56.8
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.9e-127 458.8 396 61.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 4.1e-126 455.7 480 54.8
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.0e-125 453.4 414 57.7
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.0e-124 451.1 417 57.6
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 5.0e-124 448.7 419 58.2
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.1e-123 447.6 421 56.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-121 441.0 421 56.8
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-121 441.0 421 56.8
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.9e-119 433.0 320 70.6
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.7e-119 432.6 375 62.7
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 5.4e-118 428.7 394 57.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 9.2e-118 427.9 450 52.0
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.0e-116 424.5 475 53.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.3e-116 423.3 440 52.7
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 5.1e-116 422.2 440 52.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.1e-115 421.0 430 52.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.5e-115 419.9 450 50.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.6e-114 417.2 435 51.3
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-113 414.5 379 56.2
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 7.6e-112 408.3 437 50.6
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.1e-110 404.4 507 47.7
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 3.0e-108 396.4 431 51.0
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 8.6e-108 394.8 445 51.7
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.1e-107 394.4 264 74.2
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 5.6e-107 392.1 400 55.0
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.2e-106 391.0 406 52.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.6e-106 390.6 306 64.7
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.4e-104 382.9 328 58.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 3.4e-104 382.9 446 46.0
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 4.2e-102 375.9 276 68.8
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.3e-100 370.2 354 55.9
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 8.7e-100 368.2 395 49.6
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.9e-99 367.1 414 48.8
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 2.7e-93 346.7 301 61.5
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 6.2e-90 335.5 367 49.0
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 8.1e-90 335.1 345 51.6
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 9.0e-89 331.6 400 48.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-88 330.9 400 48.0
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 9.9e-88 328.2 397 48.1
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 3.8e-87 326.2 431 46.4
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 5.4e-86 322.4 340 49.1
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 7.1e-86 322.0 419 45.6
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.3e-81 305.8 268 62.7
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.0e-80 303.9 425 44.2
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-79 300.8 362 47.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-79 300.4 362 47.8
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 8.7e-76 288.5 349 47.9
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 7.4e-75 285.4 349 47.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.4e-73 281.2 366 45.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.5e-72 277.7 205 67.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 8.8e-60 235.3 485 35.3
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.4e-57 228.0 168 69.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-57 227.6 168 69.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.0e-48 197.6 153 64.7
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.5e-46 191.4 144 63.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.9e-46 191.0 200 51.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 6.5e-39 166.0 145 61.4
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.8e-33 147.9 94 74.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-32 144.8 166 50.0
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 9.4e-30 135.6 159 48.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.7e-27 126.3 139 52.5
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-26 124.4 119 54.6
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.2e-26 124.4 84 70.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 3.5e-24 117.1 99 57.6
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 3.3e-22 110.5 85 63.5
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 5.6e-22 109.8 92 58.7
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.6e-21 108.2 99 56.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 8.9e-20 102.4 307 31.3
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.2e-19 102.1 146 49.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 8.3e-18 95.9 204 34.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.5e-14 85.1 145 42.8
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.5e-14 84.3 157 38.9
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 9.5e-14 82.4 58 70.7
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 8.0e-13 79.3 71 59.2
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 1.0e-12 79.0 119 42.9
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 4.0e-12 77.0 53 64.2
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-12 77.0 53 64.2
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 6.8e-12 76.3 197 30.5
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 7.5e-11 72.8 61 59.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.2e-10 71.2 57 66.7
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 7.0e-09 66.2 197 28.4
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 1.1e-06 58.9 86 43.0
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-06 58.9 178 30.9


User provided reference genes

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