Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.4e-107 392.9 191 100.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.1e-94 348.6 196 88.8
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 7.3e-72 274.2 184 73.4
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 4.0e-62 241.9 184 60.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 4.5e-61 238.4 181 60.2
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 9.9e-61 237.3 191 59.2
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.2e-60 236.1 185 58.9
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.9e-60 235.7 197 57.9
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 2.9e-60 235.7 184 58.2
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 8.4e-60 234.2 184 58.2
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.1e-59 233.8 184 60.3
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.4e-59 233.4 188 58.0
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.9e-59 233.0 184 60.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.9e-59 233.0 190 56.8
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 4.2e-59 231.9 182 59.3
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.5e-59 231.5 181 60.2
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 7.1e-59 231.1 178 59.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 7.1e-59 231.1 186 59.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 9.3e-59 230.7 182 58.2
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 1.2e-58 230.3 188 56.9
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.6e-58 229.9 185 58.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 2.1e-58 229.6 181 59.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 6.0e-58 228.0 182 59.3
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 6.0e-58 228.0 182 58.2
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 7.9e-58 227.6 192 56.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.0e-57 227.3 181 59.7
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.8e-57 226.5 189 57.1
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 1.8e-57 226.5 183 58.5
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.8e-57 226.5 192 56.2
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 2.3e-57 226.1 187 58.3
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.3e-57 226.1 182 55.5
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.0e-57 225.7 182 58.2
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.0e-57 225.7 182 58.2
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 3.0e-57 225.7 181 59.1
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.9e-57 225.3 187 58.3
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.9e-57 225.3 185 56.2
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 5.1e-57 224.9 187 57.2
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 5.1e-57 224.9 183 58.5
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 6.7e-57 224.6 182 57.7
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 8.7e-57 224.2 185 56.8
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.5e-56 223.4 182 58.8
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.9e-56 223.0 191 55.0
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.9e-56 223.0 183 57.9
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.5e-56 222.6 181 59.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.5e-56 222.6 194 56.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.3e-56 222.2 191 55.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.3e-56 222.2 181 56.9
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.3e-56 222.2 189 56.6
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 3.3e-56 222.2 186 57.0
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.3e-56 221.9 191 55.0
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 4.3e-56 221.9 182 57.7
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 5.6e-56 221.5 187 57.2
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 5.6e-56 221.5 187 57.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.4e-56 221.1 187 56.7
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 7.4e-56 221.1 180 58.3
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 7.4e-56 221.1 194 56.2
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 7.4e-56 221.1 187 55.1
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 7.4e-56 221.1 194 57.2
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.3e-55 220.3 187 57.2
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.3e-55 220.3 187 57.2
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.1e-55 219.5 194 56.7
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.1e-55 219.5 171 60.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 2.1e-55 219.5 181 56.9
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.7e-55 218.8 182 58.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 6.2e-55 218.0 181 58.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.1e-55 217.6 189 55.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 8.1e-55 217.6 183 54.6
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.1e-54 217.2 181 58.0
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 1.4e-54 216.9 183 57.4
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.4e-54 216.1 187 53.5
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.4e-54 216.1 182 55.5
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 2.4e-54 216.1 179 58.1
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 4.0e-54 215.3 182 57.7
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 5.3e-54 214.9 179 54.2
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.5e-53 213.4 183 55.7
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.5e-53 213.4 182 56.6
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 2.0e-53 213.0 191 53.9
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.6e-53 211.1 182 56.6
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.0e-52 210.7 180 55.0
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.9e-52 209.1 174 57.5
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.5e-52 208.0 182 55.5
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 8.4e-52 207.6 182 55.5
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 8.4e-52 207.6 164 58.5
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.1e-51 207.2 177 57.6
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.1e-51 207.2 179 56.4
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.9e-51 206.5 193 52.3
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.9e-51 206.5 182 55.5
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.9e-51 206.5 182 53.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.2e-51 205.7 180 56.7
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 4.2e-51 205.3 182 56.0
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.6e-50 203.4 210 49.0
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.6e-50 203.4 163 60.1
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.1e-50 203.0 186 52.2
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 2.1e-50 203.0 193 52.3
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.5e-50 202.2 180 53.9
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 7.9e-50 201.1 191 50.3
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.3e-49 200.3 176 53.4
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.3e-49 199.5 183 59.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 2.3e-49 199.5 161 59.6
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 8.7e-49 197.6 167 57.5
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.9e-48 196.4 175 55.4
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.3e-48 195.3 169 56.8
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 3.7e-47 192.2 177 53.7
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 4.8e-47 191.8 165 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.4e-46 190.3 183 51.4
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 1.4e-46 190.3 162 54.3
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 6.9e-46 188.0 151 59.6
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.2e-45 187.2 172 52.9
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.2e-45 187.2 184 48.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 1.0e-44 184.1 182 47.3
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.1e-41 171.8 165 47.9
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.5e-40 170.2 167 46.7
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 4.3e-40 168.7 134 57.5
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.7e-40 168.3 167 46.7
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 6.3e-39 164.9 134 54.5
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-38 164.1 160 47.5
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.4e-38 163.7 140 54.3
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.4e-38 162.9 134 56.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.1e-38 162.5 189 43.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.1e-38 162.5 164 46.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 8.5e-36 154.5 168 49.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 7.2e-35 151.4 113 61.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.8e-33 144.4 135 48.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 5.7e-32 141.7 187 38.5
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.2e-31 137.9 125 49.6
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.1e-30 135.6 167 40.7
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.1e-30 134.4 124 49.2
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.5e-27 126.3 141 47.5
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 7.2e-27 124.8 190 36.8
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 3.0e-25 119.4 192 35.4
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.6e-24 116.3 90 58.9
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-23 113.6 184 38.6
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.8e-23 112.8 76 61.8
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-18 97.4 96 45.8
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.3e-12 77.4 112 38.4
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.4e-09 67.4 53 52.8
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 4.0e-09 65.9 55 58.2
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 7.5e-08 61.6 54 57.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 9.8e-08 61.2 45 66.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 4.8e-07 58.9 105 36.2
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 5.4e-06 55.5 53 54.7


User provided reference genes

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