Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_7G024480 Cucumis sativus L. HOM05D005443 ORTHO05D009021 8.9e-122 440.3 221 100.0
ClCG07G002990 Citrullus lanatus HOM05D000092 ORTHO05D009021 7.9e-78 294.3 202 74.3
MELO3C024064.2 Cucumis melo HOM05D005443 ORTHO05D009021 2.0e-49 199.9 129 83.7
MD09G1249200 Malus domestica HOM05D005443 ORTHO05D009021 5.2e-45 185.3 192 53.1
Prupe.3G135600 Prunus persica HOM05D005443 ORTHO05D009021 5.7e-44 181.8 176 53.4
Haze_13148 Corylus avellana HOM05D005443 ORTHO05D009021 2.2e-43 179.9 176 52.8
FAN02G0200 Fragaria x ananassa HOM05D005443 ORTHO05D009021 2.2e-43 179.9 211 49.3
FvH4_6g26140 Fragaria vesca HOM05D005443 ORTHO05D009021 1.8e-42 176.8 200 50.5
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 2.4e-42 176.4 211 47.4
Sed0001067 Sechium edule HOM05D005443 ORTHO05D009021 3.1e-42 176.0 129 73.6
Cfa014595 Carpinus fangiana HOM05D005443 ORTHO05D009021 5.4e-42 175.3 176 51.7
QL08p038456 Quercus lobata HOM05D005443 ORTHO05D009021 2.0e-41 173.3 153 56.2
RcHm_v2.0_Chr2g0126191 Rosa chinensis HOM05D005443 ORTHO05D009021 2.0e-41 173.3 169 53.3
Sabra19G0111200 Salix brachista HOM05D005443 ORTHO05D009021 3.5e-41 172.6 184 48.9
TAR629G1996 Trochodendron aralioides HOM05D005443 ORTHO05D009021 5.0e-40 168.7 169 50.3
Eucgr.A01810 Eucalyptus grandis HOM05D005443 ORTHO05D009021 1.2e-36 157.5 181 49.7
Actinidia11040 Actinidia chinensis HOM05D005443 ORTHO05D009021 2.0e-36 156.8 178 48.9
Duzib052G1076 Durio zibethinus HOM05D005443 ORTHO05D009021 3.4e-36 156.0 168 48.2
Rhsim06G0144000 Rhododendron simsii HOM05D005443 ORTHO05D009021 2.9e-35 152.9 165 47.9
Lj3g0013365 Lotus japonicus HOM05D005443 ORTHO05D009021 4.9e-35 152.1 189 48.7
Manes.12G087400 Manihot esculenta HOM05D005443 ORTHO05D009021 4.9e-35 152.1 168 48.2
Thecc.02G178000 Theobroma cacao HOM05D005443 ORTHO05D009021 4.9e-35 152.1 204 42.2
Hma1.2p1_1201F.1_g266680 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 8.3e-35 151.4 176 46.6
CSS0011007 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.1e-34 151.0 178 46.6
CSS0037968 Camellia sinensis var. sinensis HOM05D005443 ORTHO05D009021 1.1e-34 151.0 178 46.6
Glyma.06G293500 Glycine max HOM05D005443 ORTHO05D009021 1.1e-34 151.0 194 45.9
CANSAT78G0275 Cannabis sativa HOM05D005443 ORTHO05D009021 3.2e-34 149.4 178 46.6
PGR042G2153 Punica granatum HOM05D005443 ORTHO05D009021 3.2e-34 149.4 194 45.9
MBI18_g16995_MAGBIO Magnolia biondii HOM05D005443 ORTHO05D009021 4.6e-33 145.6 167 51.5
Nitab4.5_0002526g0090 Nicotiana tabacum HOM05D005443 ORTHO05D009021 4.6e-33 145.6 208 39.4
Hma1.2p1_1201F.1_g266690 Hydrangea macrophylla HOM05D005443 ORTHO05D009021 7.8e-33 144.8 150 50.7
SalBow7G3189 Salvia bowleyana HOM05D005443 ORTHO05D009021 7.8e-33 144.8 162 46.9
Nitab4.5_0000512g0150 Nicotiana tabacum HOM05D005443 ORTHO05D009021 1.0e-32 144.4 148 47.3
SalBow7G4211 Salvia bowleyana HOM05D005443 ORTHO05D009021 1.0e-32 144.4 162 46.9
Gorai.013G075400 Gossypium raimondii HOM05D005443 ORTHO05D009021 1.3e-32 144.1 183 47.0
Phvul.011G114600 Phaseolus vulgaris HOM05D005443 ORTHO05D009021 2.3e-32 143.3 181 45.9
VMungo1127G1015 Vigna mungo HOM05D005443 ORTHO05D009021 3.0e-32 142.9 181 45.3
Thhalv10002053m.g Eutrema salsugineum HOM05D005443 ORTHO05D009021 3.9e-32 142.5 177 43.5
Gohir.A13G055900 Gossypium hirsutum HOM05D005443 ORTHO05D009021 3.9e-32 142.5 175 47.4
Gohir.D13G066100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 3.9e-32 142.5 183 46.4
CiPaw.04G125200 Carya illinoinensis HOM05D005443 ORTHO05D009021 5.0e-32 142.1 190 43.2
AL3G53840 Arabidopsis lyrata HOM05D005443 ORTHO05D009021 1.5e-31 140.6 176 43.8
BraA07t27796Z Brassica rapa HOM05D005443 ORTHO05D009021 1.9e-31 140.2 194 43.8
PGSC0003DMG400018348 Solanum tuberosum HOM05D005443 ORTHO05D009021 1.9e-31 140.2 171 43.9
AT2G20725 Arabidopsis thaliana HOM05D005443 ORTHO05D009021 2.5e-31 139.8 187 42.8
Carub.0003s3525 Capsella rubella HOM05D005443 ORTHO05D009021 2.5e-31 139.8 166 43.4
BcaB03g16866 Brassica carinata HOM05D005443 ORTHO05D009021 2.8e-30 136.3 181 41.4
A07p00040 Brassica napus HOM05D005443 ORTHO05D009021 2.8e-30 136.3 186 43.5
Lalb_Chr19g0135291 Lupinus albus HOM05D005443 ORTHO05D009021 2.8e-30 136.3 206 43.7
Sc21g0002690 Simmondsia chinensis HOM05D005443 ORTHO05D009021 3.6e-30 136.0 168 47.0
Sabra19G0112500 Salix brachista HOM05D005443 ORTHO05D009021 6.2e-30 135.2 259 34.4
PSO675G8511 Papaver somniferum HOM05D005443 ORTHO05D009021 8.0e-30 134.8 159 46.5
C07p00180 Brassica napus HOM05D005443 ORTHO05D009021 8.9e-29 131.3 169 43.2
Dinv23652 Davidia involucrata HOM05D005443 ORTHO05D009021 8.9e-29 131.3 130 56.2
TWI75G0884 Tripterygium wilfordii HOM05D005443 ORTHO05D009021 1.5e-28 130.6 176 42.0
Atru.chr2.3463 Acer truncatum HOM05D005443 ORTHO05D009021 2.0e-28 130.2 130 50.0
BolC7t40469H Brassica oleracea HOM05D005443 ORTHO05D009021 7.5e-28 128.3 170 42.4
HanXRQChr17g0553531 Helianthus annuus HOM05D005443 ORTHO05D009021 7.5e-28 128.3 173 44.5
Medtr0096s0020 Medicago truncatula HOM05D005443 ORTHO05D009021 1.3e-27 127.5 170 46.5
Cc05_g07040 Coffea canephora HOM05D005443 ORTHO05D009021 2.9e-27 126.3 179 39.7
HPP92_025995 Vanilla planifolia HOM05D005443 ORTHO05D009021 3.7e-27 125.9 178 39.9
Aa31LG8G17770 Aethionema arabicum HOM05D005443 ORTHO05D009021 4.9e-27 125.6 177 41.2
Migut.H01082 Erythranthe guttata HOM05D005443 ORTHO05D009021 4.9e-27 125.6 166 44.0
Sp3g33980 Schrenkiella parvula HOM05D005443 ORTHO05D009021 6.4e-27 125.2 181 38.7
arahy.Tifrunner.gnm1.ann1.Y6HWTN Arachis hypogaea HOM05D005443 ORTHO05D009021 1.1e-26 124.4 208 42.3
vmacro12294 Vaccinium macrocarpon HOM05D005443 ORTHO05D009021 2.4e-26 123.2 142 47.2
CAN.G248.23 Capsicum annuum HOM05D005443 ORTHO05D009021 1.6e-25 120.6 135 44.4
Cfa014602 Carpinus fangiana HOM05D005443 ORTHO05D009021 2.0e-25 120.2 132 51.5
THA.LOC104814500 Tarenaya hassleriana HOM05D005443 ORTHO05D009021 2.0e-25 120.2 146 42.5
Lsat_1_v5_gn_8_133320 Lactuca sativa HOM05D005443 ORTHO05D009021 1.3e-24 117.5 139 46.0
Oeu017969.1 Olea europaea HOM05D005443 ORTHO05D009021 1.3e-24 117.5 130 48.5
Ah.01g015220 Amaranthus hybridus HOM05D005443 ORTHO05D009021 6.6e-24 115.2 163 42.3
ATR0680G174 Amborella trichopoda HOM05D005443 ORTHO05D009021 1.1e-23 114.4 122 49.2
Cpa.g.sc34.150 Carica papaya HOM05D005443 ORTHO05D009021 2.5e-23 113.2 168 44.0
SGA_v2.0_scaffold109G31118 Striga asiatica HOM05D005443 ORTHO05D009021 2.5e-23 113.2 126 45.2
Aqoxy1G02515 Aquilegia oxysepala HOM05D005443 ORTHO05D009021 3.3e-23 112.8 180 39.4
Peaxi162Scf00132g00415 Petunia axillaris HOM05D005443 ORTHO05D009021 3.3e-23 112.8 130 45.4
TPR.G21753 Trifolium pratense HOM05D005443 ORTHO05D009021 4.3e-23 112.5 153 44.4
Sopen07g028070 Solanum pennellii HOM05D005443 ORTHO05D009021 7.3e-23 111.7 130 43.8
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 8.1e-22 108.2 136 42.6
Ciclev10017817m.g Citrus clementina HOM05D005443 ORTHO05D009021 3.1e-21 106.3 137 44.5
Hund07945 Selenicereus undatus HOM05D005443 ORTHO05D009021 1.9e-18 97.1 142 38.7
Os07g0457550 Oryza sativa ssp. japonica HOM05D005443 ORTHO05D009021 3.5e-17 92.8 172 32.6
BcaC06g36763 Brassica carinata HOM05D005443 ORTHO05D009021 2.3e-16 90.1 129 41.1
BcaC06g36764 Brassica carinata HOM05D005443 ORTHO05D009021 2.3e-16 90.1 129 41.1
Potri.019G101100 Populus trichocarpa HOM05D005443 ORTHO05D009021 2.5e-15 86.7 99 51.5
COL.COLO4_07390 Corchorus olitorius HOM05D005443 ORTHO05D009021 1.8e-13 80.5 86 46.5
EL10Ac9g20752 Beta vulgaris HOM05D005443 ORTHO05D009021 2.0e-12 77.0 77 51.9
unitig_62.g23169 Utricularia gibba HOM05D005443 ORTHO05D009021 2.6e-12 76.6 176 31.8
Glyma.12G111866 Glycine max HOM05D005443 ORTHO05D009021 5.8e-12 75.5 97 46.4
Pp3c3_11680 Physcomitrium patens HOM05D005443 ORTHO05D009021 3.8e-11 72.8 147 34.0
DCAR_016519 Daucus carota HOM05D005443 ORTHO05D009021 1.6e-09 67.4 73 49.3
Nn1g04052 Nelumbo nucifera HOM05D005443 ORTHO05D009021 1.3e-08 64.3 90 45.6
ECA233G3734 Erigeron canadensis HOM05D005443 ORTHO05D009021 3.0e-08 63.2 72 47.2
Mapoly0061s0039 Marchantia polymorpha HOM05D005443 ORTHO05D009021 6.6e-08 62.0 76 43.4
Atru.chr6.3005 Acer truncatum HOM05D005443 ORTHO05D009021 1.5e-07 60.8 73 46.6
Gohir.D10G119100 Gossypium hirsutum HOM05D005443 ORTHO05D009021 2.5e-07 60.1 110 39.1
CARHR111400 Cardamine hirsuta HOM05D005443 ORTHO05D009021 9.6e-07 58.2 96 37.5
Ca_25912_v3 Cicer arietinum L. HOM05D005443 ORTHO05D009021 1.6e-06 57.4 56 48.2
Atru.chr2.3477 Acer truncatum HOM05D005443 ORTHO05D009021 2.1e-06 57.0 75 45.3
arahy.Tifrunner.gnm1.ann1.0NFG0V Arachis hypogaea HOM05D005443 ORTHO05D009021 2.1e-06 57.0 121 33.9


User provided reference genes

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